PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29838.m001673
Common NameLOC8266849, RCOM_0885150
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24073.4 Da    PI: 5.0806
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29838.m001673genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.41.6e-121663350
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   i+ +sn  vtf +Rr g+  KA E+S+L +aev +++f + +k++ ++
  29838.m001673 16 ISKESNLLVTFLNRRFGVSRKADEVSILSGAEVTIVVFLPGNKVFSFC 63
                   89999***************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.04666IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-8665IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-7828IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-151181IPR002100Transcription factor, MADS-box
PfamPF003194.4E-131662IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-72843IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-74364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSRISNGSQG FEMVNISKES NLLVTFLNRR FGVSRKADEV SILSGAEVTI VVFLPGNKVF  60
SFCHTSVETT VDRFLSRNPP QISGSLQLTD AHGKSRLPEL NMVLIQTINE LEMEKKQGEE  120
LDQIRKITQA QQWWESPVEE LDLTQLKQLK ASLEMMLGDN VGKQAEQLLF QATNSPEFYA  180
PTSNGVVPFD LKNRGFNTNM MPYQYPNLGY GGFC
Cis-element ? help Back to Top
SourceLink
PlantRegMap29838.m001673
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021625068.13e-88agamous-like MADS-box protein AGL62
TrEMBLB9S9G71e-157B9S9G7_RICCO; Mads box protein, putative
STRINGXP_002522636.11e-158(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-44AGAMOUS-like 62