PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29838.m001638
Common NameLOC8266814, RCOM_0883990
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 932aa    MW: 102359 Da    PI: 7.6811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29838.m001638genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-07545565525
                    --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                    +C ++a tG C++Gd C F+H
  29838.m001638 545 PCTNYASTGSCSRGDDCMFSH 565
                    7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.4E-6486511IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187486513IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-4487512IPR000571Zinc finger, CCCH-type
SMARTSM003560.0059515541IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845515542IPR000571Zinc finger, CCCH-type
SMARTSM003560.028543567IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6544571IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4545566IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-5545565IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.141545568IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 932 aa     Download sequence    Send to blast
MDKPQILPQK TPIHFPHRPK PHLKSQTYTN LVRIISECYN HPHLCKIPPS ISQELIPAYD  60
SNEPREASAR QVLEQSELVT PDGTDHNYSV AQNNLSTDEN VKAIGLQDGG FSDTQAVIYE  120
IENIMGIEED ENTFKEKDTS DNDGSGGSGV DDKEFGQLQQ VLMDELEHVM KGSEDVVHDN  180
NCNFSTFLLD ENRCGADKER ASQNTCELIE LSVDKSMDCK VLHISENNEE KNPSPRTNLL  240
EVSHEMQQKE MESGKSVCAN DAADSSNMIE DGKMEEGEIA GEFEVDERLD DMPLKDSALP  300
LEQNKQLSEE FVDKNKFPSN DKRKSDRKDP GSLCMTVDMM NVTDKKGIEA KDVRNQMACK  360
RKVVVYEDSI LAQEPNEYKK QKKGHETKER NKGSGDKEKK KGNIGCPMIC SNNSALSSKK  420
LDQGATGSQG ITCKEKQDSG LCNKKKRGPP SEEKKEKKKE KKRKKRAQKN RELGVKRLKL  480
RPVEKPKPVV FCRHYIRGRC QEGEKCKFSH DTIPLTKSKP CCHFARNSCL KGDDCPFDHE  540
LSKYPCTNYA STGSCSRGDD CMFSHKLPLK EDLPSASNVC TPDLNSPSLP HASNSKKQLD  600
SGGISHHTAK ASPDTGGGLS RKDTERNVPK GVLGPHVLVP KGISFLSAGK SSVVESSHST  660
PRSSSLSRSE GFKVGNQRDQ SAAGSNENSN EIPKRIPAAL IPNGINFLSF GRAPLEFSGT  720
RNLTSDSGAK SSLSSNFDAH KQSSFPGNDV QVGKETSESV SNSKPWLKRM LQKTEFAASS  780
LKSNSLSFNE SSINASIGNA QDSMPSSSAT LVDRTLQESE ILPDRRQDFR TISHGQPASP  840
LGSGQSADCL GHARLKSAPN SAQKALISTL AFAAKVESQM KSKQPTISTL SLSSRADKET  900
EDIGKSKDSQ NNLAKASKIL DFLSSVGDKT KR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1444465KKRGPPSEEKKEKKKEKKRKKR
2457465KKEKKRKKR
3460464KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29838.m001638
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522601.10.0uncharacterized protein LOC8266814 isoform X1
TrEMBLB9S9D20.0B9S9D2_RICCO; Uncharacterized protein
STRINGXP_002522601.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323