PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29830.m001452
Common NameLOC8281315, RCOM_0874480
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WOX
Protein Properties Length: 247aa    MW: 27842.7 Da    PI: 5.3694
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29830.m001452genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.31.9e-21104164257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  29830.m001452 104 RQRWTPTPVQLQVLERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 164
                    89*****************99**************************************97 PP
2Wus_type_Homeobox101.56e-33103166265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q+++Le+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
      29830.m001452 103 ARQRWTPTPVQLQVLERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 166
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-1898168IPR009057Homeodomain-like
PROSITE profilePS5007115.208100165IPR001356Homeobox domain
SMARTSM003895.1E-15102169IPR001356Homeobox domain
SuperFamilySSF466891.54E-18103166IPR009057Homeodomain-like
CDDcd000867.47E-14104166No hitNo description
PfamPF000462.8E-19104164IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEWDNNNQEN QNQRETRNGN IINTGSSVNG NGNVNGNGML YVKVMTDEQL ETLRKQIAVY  60
ATICEQLVEM HKTLSAQQDL AGGRLGNLYC DPLMTSGGHK ITARQRWTPT PVQLQVLERI  120
FDQGNGTPSK QKIKEITSEL SQHGQISETN VYNWFQNRRA RSKRKQLVAS SNTESEVETE  180
VDSLNENKTK PEIFHSQQNH PRAEDLCFQS PEISSELHFL GVLPNQRDGA PGSYNLYDQA  240
EDYGMAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157165RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29830.m001452
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9827121e-180KF982712.1 Populus tomentosa WOX13a (WOX13a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521723.10.0WUSCHEL-related homeobox 13 isoform X2
SwissprotO817881e-105WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLB9S6V40.0B9S6V4_RICCO; DNA binding protein, putative
STRINGXP_002521723.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-98WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]