PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29827.m002550 | ||||||||
Common Name | RCOM_0865000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | LSD | ||||||||
Protein Properties | Length: 108aa MW: 11227 Da PI: 8.3257 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.5 | 1.1e-13 | 29 | 53 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+C++C++V 29827.m002550 29 CSGCRNLLLYPVGATSVCCSVCNAV 53 ************************9 PP | |||||||
2 | zf-LSD1 | 42.5 | 1e-13 | 68 | 92 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V 29827.m002550 68 CGNCRMLLMYQYGARSVKCAVCNFV 92 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.6E-13 | 26 | 56 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-10 | 29 | 53 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.4E-12 | 65 | 95 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.3E-13 | 68 | 92 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MPVPLAPYPT PPAPHTPPAA NGVQSQLVCS GCRNLLLYPV GATSVCCSVC NAVTIVPPPA 60 NQVAHVNCGN CRMLLMYQYG ARSVKCAVCN FVTSVGASTS TTDQKFNS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29827.m002550 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 8e-32 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028109937.1 | 4e-56 | protein LOL1 isoform X1 | ||||
Refseq | XP_028109938.1 | 4e-56 | protein LOL1 isoform X1 | ||||
Refseq | XP_028109939.1 | 4e-56 | protein LOL1 isoform X1 | ||||
Swissprot | Q93ZB1 | 2e-44 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | B9S1H1 | 6e-71 | B9S1H1_RICCO; Uncharacterized protein | ||||
STRING | XP_002519836.1 | 1e-71 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-45 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | 29827.m002550 |
Publications ? help Back to Top | |||
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