PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29823.m000215
Common NameLOC8260680, RCOM_0857340
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 527aa    MW: 57838.5 Da    PI: 4.939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29823.m000215genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-172976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l+d+vk++G g+W+++ +  g+ R++k+c++rw ++l
    29823.m000215 29 KGPWTAAEDAILIDYVKKHGEGNWNSVQKNSGLMRCGKSCRLRWANHL 76
                     79******************************************9986 PP
2Myb_DNA-binding50.54.8e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
    29823.m000215  82 KGSFTPEEERIIIELHAKLGNK-WARMASQLP-GRTDNEIKNFWNT 125
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1032476IPR017930Myb domain
SuperFamilySSF466892.1E-3026123IPR009057Homeodomain-like
SMARTSM007173.9E-142878IPR001005SANT/Myb domain
PfamPF002493.6E-152976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-243083IPR009057Homeodomain-like
CDDcd001675.63E-123176No hitNo description
PROSITE profilePS5129425.91277131IPR017930Myb domain
SMARTSM007172.3E-1681129IPR001005SANT/Myb domain
PfamPF002495.1E-1582125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2584130IPR009057Homeodomain-like
CDDcd001678.56E-1284125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MISNNGGNTN GGAPLETGPK AANLQGLKKG PWTAAEDAIL IDYVKKHGEG NWNSVQKNSG  60
LMRCGKSCRL RWANHLRPNL KKGSFTPEEE RIIIELHAKL GNKWARMASQ LPGRTDNEIK  120
NFWNTRMKRR QRAGLPIYPQ EFQEEANALN IHHQQDQQKH LNSSCSSFSS FLSSSRKAAY  180
NPSLSLLDPI NFSPALDALQ NHLSTSFYTN PTLQFKSFGD NNANNSSLAL PLSPVSHRAR  240
SPSSISPFNE NFAGQTITRT PLPFSYNTAN FENMSFTSLI MGAQVEPIGL VPGFKSELPS  300
DQTPPCPNTP FSPNTSGGVG EKSSKNTDNE NDNDDNETVL TEMHGNRNSG LLDALILESH  360
NLSSKENLND RNSLVASDKG KRVVGEPTEE GENEEEMEAA KRIKLPSTNV DEPSGENHYS  420
DDMSSSQSSI GVKPTEDPME EMNSMDDDDL LSLLDNFPSS TPLPEWYRRR NISNGLSSSP  480
IGDDGRGHEV DEQDAASQEA QGTTTGGTAN VEWAFGSSYW NNMPSIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-30271305107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29823.m000215
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529670.10.0transcription factor MYB101
TrEMBLB9SUK10.0B9SUK1_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002529670.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-74myb domain protein 101