PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29822.m003484
Common NameLOC8276036, RCOM_0855110
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 560aa    MW: 60066.4 Da    PI: 6.9662
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29822.m003484genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.5e-30227286159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  29822.m003484 227 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGTHNHP 286
                    58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-31212288IPR003657WRKY domain
SuperFamilySSF1182908.5E-27220288IPR003657WRKY domain
PROSITE profilePS5081128.346222288IPR003657WRKY domain
SMARTSM007748.6E-36227287IPR003657WRKY domain
PfamPF031063.0E-26228286IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MPNSGATVDL ISHEGGFSLQ VKNDNKVEIG GHIQDHSVKP SSSSNEGSSN SKEVDVLESA  60
KAEMGEVREE NERLKKMLKQ VEKDYQSLML RFFNIFQQET CKKSSDSTPS NHNETEEHEL  120
VSLCLGRTPP PCEPKKDEKQ SGSNSSKSCR EDEELKAKLS LGLDATELVS NPSSGNSLEE  180
VKEDEAGETW PPSKVNPKRS IDDEVAQQSN VKRARVCVRA RCDTPTMNDG CQWRKYGQKI  240
SKGNPCPRAY YRCTVAPACP VRKQVQRCAE DMSILITTYE GTHNHPLPVT ATAMASTTSA  300
AASMLLSGSS SSQPGVTSHA TFATPATHDH LNGLNFSLHD NSRTKQFYLA NPSSPLFPTI  360
TLDLTTSPSS TSSTTPFNRL FSSTSSSRFP STSLNFSSAE SSILPTVWGN GYQSYNSIGS  420
LVSSLGKQNH QMYQPATASQ QALTETLTKA ITSDPSFRTV IAAAISSVMG SSTGASASPS  480
KGVVAESFGQ SLKLGEPNNQ ANSTINSLTQ NGKGSCASSY FNGLSSSTSQ MGSLLQSAAL  540
PFSIFNSAPT STNNDKDHKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20214288174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29822.m003484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517481.10.0probable WRKY transcription factor 72
SwissprotQ9LXG81e-115WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLB9RUN60.0B9RUN6_RICCO; WRKY transcription factor, putative
STRINGXP_002517481.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-91WRKY DNA-binding protein 72