PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29820.m000986
Common NameRCOM_0847570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 509aa    MW: 57484.1 Da    PI: 4.5534
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29820.m000986genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1302.6e-401385083374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lL +  ea++++++ela  l+  l+e +s +g+p+ R+a+ +    ++   +      +    +++s   s +  aa+++f++++P  +++h++a
  29820.m000986 138 HLLKAYGEAMENQKTELAGVLIRCLREKVSLAGEPLLRIAFSL----SQDTEK----HGDY--LKQES---SNNFEAAFRAFYQIFPNGRIAHFAA 220
                    78889999********************************965....455554....1122..22333...56777899***************** PP

           GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl.vakrle 187
                    N+aIlea+  + e++Hi+Dfd+++G+QWp++l++La  ++g   +R+T+++ ++++        + +e ++rL + A+ +g++++ + + +++ ++
  29820.m000986 221 NSAILEAMPADaEMIHIVDFDMGEGVQWPPMLETLARLQKG---VRLTAIKWEQENcdeapLMWSFSEAKRRLVDHARPFGLKLKVEEMgIEDLVS 313
                    ********98879***********************99888...*******9998886655566789********************985555667 PP

           GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnse..........sFlerflealeyysalfds 270
                    +++  + r  ++E la n+++ l ++   +v +++  ++++++ k+l ++ v +  ++   +  +++           F+  f   l +y al++s
  29820.m000986 314 EIKRTKKRGGRKEWLAFNCMVGLPHMG--RVRSRKLVEDFVRVAKDLMADSVCCNSSNrgiLTFGDGdawetvrdcsGFASYFEGNLMHYQALLES 407
                    77777777777***************9..777777889***********9999988884432223336778888888******************* PP

           GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgW 362
                    +e+++p +  e+r+ +E  ++ + i++    +  +      ++++  +  +   ++  ++s++  ++a+  +++ +   y+v    e +++++l W
  29820.m000986 408 IEMNFPIHLaEARMALECLFVTPFISSQAWIQRWM------EMKECCNLQMGTSLEGWRVSNESLEEARETVKEKQ-SLYKVRiggEWNNEMILEW 496
                    ******98769999999998888887654444443......34444444455679999****************99.45999888888******** PP

           GRAS 363 kdrpLvsvSaWr 374
                    ++ +Lv vSaWr
  29820.m000986 497 RGTQLVRVSAWR 508
                    ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.679110509IPR005202Transcription factor GRAS
PfamPF035149.0E-38138508IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDVHADVCQF SSSFSTGDDT TSDISSIPCL STLFPNGFAQ SPACTDNQLQ ALSVEDFLLD  60
NEGFDPNLNG DMEFLYGQFC ESEDSFPFSN EGKELWSPSS PSTKFSEAAS AESTSIQPSL  120
LVFPGEESEL DNRLTVLHLL KAYGEAMENQ KTELAGVLIR CLREKVSLAG EPLLRIAFSL  180
SQDTEKHGDY LKQESSNNFE AAFRAFYQIF PNGRIAHFAA NSAILEAMPA DAEMIHIVDF  240
DMGEGVQWPP MLETLARLQK GVRLTAIKWE QENCDEAPLM WSFSEAKRRL VDHARPFGLK  300
LKVEEMGIED LVSEIKRTKK RGGRKEWLAF NCMVGLPHMG RVRSRKLVED FVRVAKDLMA  360
DSVCCNSSNR GILTFGDGDA WETVRDCSGF ASYFEGNLMH YQALLESIEM NFPIHLAEAR  420
MALECLFVTP FISSQAWIQR WMEMKECCNL QMGTSLEGWR VSNESLEEAR ETVKEKQSLY  480
KVRIGGEWNN EMILEWRGTQ LVRVSAWRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1315450821375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29820.m000986
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526659.20.0nodulation-signaling pathway 2 protein
TrEMBLB9SKZ00.0B9SKZ0_RICCO; Transcription factor, putative
STRINGXP_002526659.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.18e-16GRAS family protein