PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29820.m000985
Common NameLOC8263098, RCOM_0847460
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 517aa    MW: 59681.5 Da    PI: 4.5557
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29820.m000985genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS141.58.5e-441415173374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +l ++ Aea ++++++la+ ++ r+ e +sp     +Rl  y  + L ++           l+  ++s    ++  +a+++f++++P+  ++h+ta
  29820.m000985 141 NLAMAYAEATENKQAALAEVIMRRIGEKVSPISGIKERLLYYAFQPLDKQSDY--------LK--QES---FKNFDKAFEVFYQIFPYGMVAHFTA 223
                    566889*****************************************998665........33..332...556778999**************** PP

           GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg.............ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                    N+aIlea  ++ e +H++Dfdi++G+QWp+++ aL++++++             + +l+iT+++  e++  ++leet++rL+++A++lg+ ++ + 
  29820.m000985 224 NSAILEAKPRDaEILHVVDFDIGEGIQWPSMIMALSQQQNErmqqhgynqrhlqQITLKITAIKWREEHPWRKLEETKRRLQNYADSLGLMLHVEE 319
                    *******99984666*********************998666777888988887779***********************************9999 PP

           GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl........sPkvvvvve...qeadhnsesFlerflealeyys 265
                    +   ++++l  e  r  ++E la n++ ++ ++   +  ++ +  e+L + k+         s  +v++ e   +e+  n   F   f + +e+y 
  29820.m000985 320 I---EVQNLAREIKRGGRKEWLAFNCMWAIPHMG--RIRSRRHVIEFLTMAKDSvadwsddrSRGIVTFGEgigHETLSNCDGFGSFFERYMEHYE 410
                    8...66777655556677**************98..444444566777777754122222214558898884445666688899999999****** PP

           GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgsl 358
                     l++s+e ++p +  e+r ++E  +l++ ++ v ++++ +  e +e     ++  +  GF+ +++s++  ++ak ++r+ +   g r+e  +s+ l
  29820.m000985 411 GLLESIEWGFPIHLaEARLSMECLFLAPYVSRVSMMQTWK--EINE----GSDFKTGIGFEGLRVSNNSLMEAKEMVREGDtPYGVRIEgGNSNVL 500
                    ***********987799***********999988888887..4444....34445579***********************888999996678999 PP

           GRAS 359 vlgWkdr.pLvsvSaWr 374
                    vl W+++ pLv+vSaWr
  29820.m000985 501 VLDWRGNmPLVTVSAWR 517
                    9***97549*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.658113494IPR005202Transcription factor GRAS
PfamPF035142.9E-41141517IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MLESALFQFS CLPYSNNVEL SLDDANYTHF DLSPPFTEID SPSTIEFVDS APPHDDNMYM  60
EFLFDEPFPF DFQDLEFIWG QDIQENDEGK ITTDDYEYCS FSPSIISGDL STDINWSNLV  120
HQSLIMPKEC MGISNLFSLT NLAMAYAEAT ENKQAALAEV IMRRIGEKVS PISGIKERLL  180
YYAFQPLDKQ SDYLKQESFK NFDKAFEVFY QIFPYGMVAH FTANSAILEA KPRDAEILHV  240
VDFDIGEGIQ WPSMIMALSQ QQNERMQQHG YNQRHLQQIT LKITAIKWRE EHPWRKLEET  300
KRRLQNYADS LGLMLHVEEI EVQNLAREIK RGGRKEWLAF NCMWAIPHMG RIRSRRHVIE  360
FLTMAKDSVA DWSDDRSRGI VTFGEGIGHE TLSNCDGFGS FFERYMEHYE GLLESIEWGF  420
PIHLAEARLS MECLFLAPYV SRVSMMQTWK EINEGSDFKT GIGFEGLRVS NNSLMEAKEM  480
VREGDTPYGV RIEGGNSNVL VLDWRGNMPL VTVSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1320651780375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29820.m000985
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526658.10.0nodulation-signaling pathway 2 protein
TrEMBLB9SKY90.0B9SKY9_RICCO; Transcription factor, putative
STRINGXP_002526658.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-23GRAS family protein