PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29816.m000691
Common NameLOC8258203, RCOM_0843780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WOX
Protein Properties Length: 316aa    MW: 36360.7 Da    PI: 9.8695
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29816.m000691genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.32.3e-2275134357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    +R+++t+eql +Lee++++ +++p+ae+++++A++l    +++ ++V++WFqN++a+e++
  29816.m000691  75 SRWNPTPEQLLALEEMYRRgTKTPTAEQIQQIASQLrrfgKIEGKNVFYWFQNHKARERQ 134
                    7*****************99**************************************97 PP
2Wus_type_Homeobox111.64.3e-3674136365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ+  Lee+y++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+
      29816.m000691  74 SSRWNPTPEQLLALEEMYRRGTKTPTAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKR 136
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.87270135IPR001356Homeobox domain
SMARTSM003891.4E-772139IPR001356Homeobox domain
SuperFamilySSF466898.32E-1474140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-1075134IPR009057Homeodomain-like
PfamPF000467.3E-2075134IPR001356Homeobox domain
CDDcd000868.35E-776136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNGSDKNELN MNGALNLEQF VPISSNAKSK SPSQTTTFPY SSCIHSYSIN LHGLNGNEPE  60
QNKREFSEQS LMGSSRWNPT PEQLLALEEM YRRGTKTPTA EQIQQIASQL RRFGKIEGKN  120
VFYWFQNHKA RERQKRRREM ESNCKSRKHD HTGSLDKNKT GLRRTGHELE QNRNLLVPPS  180
NCSDQHIEGP VLMRTAATAE STARHGMTYF EEMEFYQHNC GRLEKNSTWH AVDSYPSLSP  240
IHLMNNMSTS TRFISLQRQN SWFKPKRVEE VETLELFPLS SSGSVNGSKK DTKVPIRAIN  300
TKLNSNQYFE FLPLKN
Cis-element ? help Back to Top
SourceLink
PlantRegMap29816.m000691
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526032.10.0WUSCHEL-related homeobox 1
TrEMBLB9SJ630.0B9SJ63_RICCO; Protein WUSCHEL, putative
STRINGXP_002526032.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.17e-41WUSCHEL related homeobox 1