PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29814.m000747
Common NameLOC8265702, RCOM_0839740
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 375aa    MW: 42562.5 Da    PI: 7.7784
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29814.m000747genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.3e-3274127255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m++kgL+++hvkSHLQ+YR+
  29814.m000747  74 PRLRWTPDLHLCFVHAVERLGGEERATPKLVLQMMNIKGLSIAHVKSHLQMYRS 127
                    8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.03770130IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-3070128IPR009057Homeodomain-like
SuperFamilySSF466892.15E-1472128IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-2374129IPR006447Myb domain, plants
PfamPF002491.4E-975126IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MKEISDSFED SKSSSCSPKK VDEDDEEVKR SCFKPRNRES SSNDSSVDHE EISEKKEGSK  60
ATRSVRQYNR SKMPRLRWTP DLHLCFVHAV ERLGGEERAT PKLVLQMMNI KGLSIAHVKS  120
HLQMYRSKKI DDATREQGLI SEGGDRNIFN LGQIPMLQTF NQEPFANFRY GDASRRSFMG  180
GAVIHRGKQG INGSESDRFL GCNKNQNSLT YNSNVCFPFL NEQINQSLEE FKSFHRSWRI  240
ESKPNSMDSN LFITKLQERR GIDQADCISN NSSINKNLKT IQETRNGLKR KTSLDADCNL  300
DLNLSLKVTV KDHDDDNDGV LDHEMGVESE ELVYCSTLSL SLSSSSSSKL SGLKEEDGRR  360
KIKEARRTST LDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1875129458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1875129458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1875129357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1875129357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1875129357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1875129357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1875129458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1875129458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1875129458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1875129458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1875129458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1875129458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29814.m000747
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528326.10.0uncharacterized protein LOC8265702
TrEMBLB9SQQ70.0B9SQQ7_RICCO; DNA binding protein, putative
STRINGXP_002528326.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-45G2-like family protein