PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29813.m001506
Common NameRCOM_0837110
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 521aa    MW: 56932.6 Da    PI: 6.243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29813.m001506genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-16171216147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
    29813.m001506 171 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 216
                      899*****************************.***********996 PP
2Myb_DNA-binding56.94.6e-18223266146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
    29813.m001506 223 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 266
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201166217IPR017930Myb domain
SMARTSM007173.3E-14170219IPR001005SANT/Myb domain
PfamPF002499.6E-16171216IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-28171264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-25172224IPR009057Homeodomain-like
CDDcd001676.04E-13174215No hitNo description
PROSITE profilePS5129427.592218272IPR017930Myb domain
SMARTSM007178.2E-15222270IPR001005SANT/Myb domain
PfamPF002497.4E-15223265IPR001005SANT/Myb domain
CDDcd001677.24E-12225265No hitNo description
Gene3DG3DSA:1.10.10.605.7E-21225271IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MANKCVIYDA TLDKHTNGLI TATTAAATTI ICYNASSSSS SSSSSSSSSS SSPSSSSSAA  60
GMVFADIGSL SLSPNNYGLG TQSEMGNARG SATTWGSFPF MSSDHNGVLE GKGVSDDCSD  120
GFGENNETIN HNNANCSNDH EEENPNNNEN MNSSSGKETD SSSGQSKLCA RGHWRPAEDT  180
KLKELVALYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFTEEE EERLMQAHRL  240
YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KYREQSSAYR RRKLSQSVYR RADETSSFVC  300
GDPSTIQEPP QPPPPYCLNI LNGGGLTNLS PYPISTFNGG GGFGSGGEAV SNIQAPLTGF  360
CAHQTPYDFF SGPKSNDVIG MFSQTRSCDR PSDEPHISGF YPQQQQQHYP SYIMAMQQSS  420
NYQNPYYFSD STASTTTTAN PQVSAANEVS AANEVSPSSS SVAAAEKHFE AIPPPFIDFL  480
GKLKIIRNVD VIQDQTERPL EAEVKEKEKE KGFSLFIFKV R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-341712717107B-MYB
1mse_C4e-341712714104C-Myb DNA-Binding Domain
1msf_C4e-341712714104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29813.m001506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346332e-82KM034633.1 Jatropha curcas clone JcMYB012 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576776.10.0transcription factor CSA
RefseqXP_015576777.10.0transcription factor CSA
TrEMBLB9S8Y50.0B9S8Y5_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002522454.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-76myb domain protein 105