PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29813.m001503

Common Name

RCOM_0836880

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 389aa MW: 42204.1 Da PI: 8.2127

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29813.m001503	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	71	1.7e-22	60	96	26	62
zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++Pr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss 29813.m001503 60 TNRPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 96 689*******************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	15.463	40	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.3E-16	59	94	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-12	59	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MSEGIKLFGK TIPLPALYHL SSANDPCSQA TGDDLDDFSD KTTASLHEYD SVKEQQAQDT 60 NRPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKSSSASHY RHIIVSEALR TAQGHALNGV 120 HNPSFGSSST VLTFGADSPL CESVASVLNL SEKNGYHRPE QRILVPCGRT ADNGDDRLSR 180 NSVTASNALE KGGKRVSQET VTKNYQGIAP QIPCFPGPPW PYPWSSPLPT PPTFCPSGFP 240 VSFYPAPAYW GCTVPNPWNV PPCLSPQSPS VNHRAAASLS PTSPLGKHSR EGNILKPVNS 300 EEPSGESNCT ERSVLAPKAL RIDDPTEAVT SSIWATLGIK CEKTNLNGGL FEGFQSKNEN 360 RNYIAERKSS VLQVNPAALS WSLNFHEST

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MSEGIKLFGK TIPLPALYHL SSANDPCSQA TGDDLDDFSD KTTASLHEYD SVKEQQAQDT  60
NRPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKSSSASHY RHIIVSEALR TAQGHALNGV  120
HNPSFGSSST VLTFGADSPL CESVASVLNL SEKNGYHRPE QRILVPCGRT ADNGDDRLSR  180
NSVTASNALE KGGKRVSQET VTKNYQGIAP QIPCFPGPPW PYPWSSPLPT PPTFCPSGFP  240
VSFYPAPAYW GCTVPNPWNV PPCLSPQSPS VNHRAAASLS PTSPLGKHSR EGNILKPVNS  300
EEPSGESNCT ERSVLAPKAL RIDDPTEAVT SSIWATLGIK CEKTNLNGGL FEGFQSKNEN  360
RNYIAERKSS VLQVNPAALS WSLNFHEST

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29813.m001503

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015576784.1	0.0	cyclic dof factor 3
TrEMBL	B9S8Y2	0.0	B9S8Y2_RICCO; Uncharacterized protein
STRING	XP_002522451.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	8e-54	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	29813.m001503