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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | 29813.m001501 | ||||||||
| Common Name | LOC8281817, RCOM_0836650 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 361aa MW: 40426.2 Da PI: 7.9224 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 105 | 4.5e-33 | 20 | 74 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
29813.m001501 20 KPRLKWTPELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 74
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 10.595 | 17 | 77 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.1E-31 | 18 | 76 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 4.3E-17 | 19 | 75 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 4.9E-23 | 20 | 75 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.2E-9 | 22 | 73 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 3.5E-23 | 127 | 174 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 361 aa Download sequence Send to blast |
MGLQDLQNQN MNLVLSTDAK PRLKWTPELH QRFVEAVNQL GGADKATPKS LMRVMGIPGL 60 TLYHLKSHLQ KYRLGKSQLL HSESPSQSQS QASIENKQED YKEIQSTNCE LKAGIAEEIQ 120 NPTNESFQIA QALQMQMEVQ RKLHEQIEVQ RHLQLRIEAQ GKYLRSVLKK AQETLSGYNP 180 SSAMGIEIAK AELSRLVSMV NTGCSSSSIS ELTEIGNSIL NDTTDKNQMI RRGTVCSAES 240 SLTSSESSGR KEDDMQQKNE IGATNKSITT SLELPLMDAH RQDKSWNNNN NNHNNNTYQP 300 TNQAKKRSST TISSDGICVQ QPIAKRSRNG EQLRIFDLNS QYQIDFEPGS TRAIDLNCQG 360 F |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 4e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 4e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 4e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 4e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 4e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 4e-21 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 4e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 4e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 4e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 4e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 4e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 4e-21 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 29813.m001501 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002522449.1 | 0.0 | myb family transcription factor PHL8 isoform X2 | ||||
| Swissprot | F4I274 | 8e-85 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
| TrEMBL | B9S8Y0 | 0.0 | B9S8Y0_RICCO; Transcription factor, putative | ||||
| STRING | XP_002522449.1 | 0.0 | (Ricinus communis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5218 | 32 | 53 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69580.1 | 8e-83 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | 29813.m001501 |
| Entrez Gene | 8281817 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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