PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29813.m001485 | ||||||||
Common Name | LOC8281801, RCOM_0836390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 319aa MW: 34827.5 Da PI: 8.1634 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.9 | 4.9e-33 | 60 | 115 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 v YkeClkNhAaslGg a+DGCgEfmp+++++ +++++lkCaACgCHRnFHRr++ 29813.m001485 60 VVSYKECLKNHAASLGGVALDGCGEFMPTPSATlSDPTSLKCAACGCHRNFHRRDH 115 689***************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.2E-27 | 61 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-21 | 61 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-29 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.766 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.33E-16 | 179 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-27 | 184 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.9E-27 | 192 | 249 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MDLITTTART SNPPHTSISP ESDTDTETPL QTHLSKALSL TNGSLIRQHH NPPEPQQPMV 60 VSYKECLKNH AASLGGVALD GCGEFMPTPS ATLSDPTSLK CAACGCHRNF HRRDHFPPPT 120 LPAVLYWTSS PSPSSGPSPS PSSPASPTPQ QSVYPSAPHM LLALSTGQSG LVDENRHQNP 180 GLNPMVMNPY GRKRARTKFS EEQREKMQSF AEKLGWKMLR GNDEKMVEDF CSEVGVKRNV 240 FKVWMHNNKH RREKGNGHNN NNKSNVDGDE GIGSVTYNNN NNNTNSSSNN GYDSLDRYQI 300 ESKVGVRGST TDGSSPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-18 | 193 | 250 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29813.m001485 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002522433.1 | 0.0 | zinc-finger homeodomain protein 11 | ||||
Swissprot | Q9SEZ1 | 4e-60 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | B9S8W4 | 0.0 | B9S8W4_RICCO; Transcription factor, putative | ||||
STRING | XP_002522433.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-56 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | 29813.m001485 |
Entrez Gene | 8281801 |
Publications ? help Back to Top | |||
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