PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29812.m000200
Common NameLOC8262290, RCOM_0834700
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Nin-like
Protein Properties Length: 902aa    MW: 101359 Da    PI: 5.2773
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29812.m000200genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.23.8e-29602652252
         RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                    ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  29812.m000200 602 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 652
                    799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.995591672IPR003035RWP-RK domain
PfamPF020428.3E-25604652IPR003035RWP-RK domain
SuperFamilySSF542772.75E-20801889No hitNo description
PROSITE profilePS5174520.435803886IPR000270PB1 domain
SMARTSM006661.2E-19803886IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.9E-19804884No hitNo description
CDDcd064072.13E-35804885No hitNo description
PfamPF005645.8E-13804885IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MDHAVSALNS TLLTFSSTSM DLDFLDKSLS PASWLESTDG INLLEPEPSR SSVLFDTSQY  60
SPFKRPDHFS LDSDHQIHRK EIENMPENPS LDVYPGIKEH VADTTISLVQ PEGGESGKRC  120
LTDPSSTINS RLMIAIEYLK DYVEESDVLI QIWVPTNKGG QIVLTTIDQP YSLNPNCKGL  180
ASYRNVSKTF HLTADADLKE SAGLPGRVFL GKLPEWTPDV RFFRSDECPR KNYAKLYQIS  240
GCLALPVFEQ DSGVCMAVVE IVTTTQKISY HLEVEIVCKA LEAVDLKGSQ DCFPFGVKAC  300
NQFYQIAVPE ISEILQSVYD TFRLPLAMTW AICDRQGESE QHQFAEEFGY CICTVDSACC  360
VAENDLMGFH EACSEQYLFL DQGIVGKAFA TNKQRFATDI TSFSKTSYPL SHHARIFNLG  420
AAVAIPLRNM YTGLVEYVLE LFLPRDCKSI EEQKQIWDIL PGIVQQACQS FHVIMDKELD  480
NEVSEQVVVD LDRRLLKFVS SPSEPSQEES FWTPHKIDTE KKGKCDFMSW GCPKEEPEDE  540
FKITTHWDNN ELDIYQEQIF SDFDHPNFML DLRVNDSEDS SVGQYRSLSS RSAGEKRQMK  600
TEKTISLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG INRWPSRKIK KVDHSLRKLQ  660
LVVNSIRGAE GLIQVDSFYK TFGEFSSPKI SGKGPLQSFE TSDNSKKLNP QPETGLLRPQ  720
ANDSKSQSSS CSQNSRSRIC GCNEARQLNT PTPTNDLKNG CTNIGVEVPA VALKRTGSEA  780
QLHSLNLPSL PKSTGQNLRD GVIFRVKATF GEENIRFSLL PNWGFRDLQL EIAKRFKIDD  840
FTKIYLKYLD IDHESVLLTC DADLEECIDL LSLSHMNTIK ISLHQASHQP NLGSSFSSSS  900
QS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29812.m000200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532423.10.0protein NLP2
RefseqXP_015582869.10.0protein NLP2
RefseqXP_025015443.10.0protein NLP2
TrEMBLB9T2F40.0B9T2F4_RICCO; Transcription factor, putative
STRINGXP_002532423.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein