PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29806.m000981

Common Name

LOC8276902, RCOM_0825030

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

ZF-HD

Protein Properties

Length: 311aa MW: 34180.4 Da PI: 8.3333

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29806.m000981	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.9	4.4e-32	85	142	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + v+YkeClkNhAa++Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHR+e + e 29806.m000981 85 KMVKYKECLKNHAAAMGGNATDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRKEIDGE 142 6799***********************9.999******************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.9E-29	87	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-26	87	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.3E-31	88	139	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.541	89	138	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	7.3E-30	220	291	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.05E-19	228	290	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.8E-26	229	285	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MELSSHEVEI PIPLNSTYGG GHGHAHGGHG HGHMIHHDHH NSTPHNHIIP SSAPQLTSNN 60 GPSSLPNTGL DDHHHVTSTT STFKKMVKYK ECLKNHAAAM GGNATDGCGE FMPSGEEGSI 120 EALTCSACNC HRNFHRKEID GETNPCDYYP PHFNRVGRKV ILGHHKNILA PEALGYPTGT 180 GTLVPSRATV APHHQMIMSY NMGGSLPSES DEQEDGGGVV MARPQQLVKK RYRTKFSQEQ 240 KEKMLNFAEK VGWKIQKQEE AVVQQFCQEI GVKRRVLKVW MHNNKHNLAK KSPLITATTT 300 PTTTTPPPTT T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	6e-24	228	287	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29806.m000981

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015578866.1	0.0	zinc-finger homeodomain protein 3
Swissprot	O64722	1e-77	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	B9SIQ1	0.0	B9SIQ1_RICCO; Transcription factor, putative
STRING	XP_002525870.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	2e-75	homeobox protein 21

Link Out ? help Back to Top
Phytozome	29806.m000981
Entrez Gene	8276902

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]