PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29805.m001543

Common Name

LOC8283330, RCOM_0820570

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

G2-like

Protein Properties

Length: 313aa MW: 34532.9 Da PI: 6.4267

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29805.m001543	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.6e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+a++qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl 29805.m001543 44 KPRLRWTADLHNRFVDAISQLGGPNKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.983	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-31	41	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-24	44	99	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.16E-16	44	100	IPR009057	Homeodomain-like
Pfam	PF00249	6.7E-7	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-14	142	187	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MFQRTIQPHQ QQGGIMDQQQ EEMQIQEHNQ GIREPCLVLT SDPKPRLRWT ADLHNRFVDA 60 ISQLGGPNKA TPKAIMRTMN VKGLTLFHLK SHLQKYRLGK QSGKDMGEAS KDGLSGSYLL 120 ESPGAGSSSP NIVTSDMNEG YEVKEALRVQ MEVQSKLYLQ VEAEKHLQIR QDAEKRYLAM 180 LERACKMLAD QFLGGTVIDS DIQKDSGSKK KRSASVDPLG FHSLQTEAEA EARGLEEVPS 240 SLHQQGADCS TESCLTSNES PGGLNLEGSP AGGKKQMPSL DSTLNWEEAK MRTSEVNMVQ 300 VNSHGMSGYG IWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-17	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29805.m001543

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025014210.1	0.0	uncharacterized protein LOC8283331
Swissprot	Q94A57	3e-59	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	B9SGW8	0.0	B9SGW8_RICCO; Transcription factor, putative
STRING	XP_002525237.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-62	G2-like family protein

Link Out ? help Back to Top
Phytozome	29805.m001543
Entrez Gene	8283330

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]