PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29804.m001536
Common NameRCOM_0818130
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 30995.6 Da    PI: 10.0172
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29804.m001536genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-273786251
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   ri+n++ rqvtfskRrng+lKKA ELS+LCdaev viifsst kly+y+s
  29804.m001536 37 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYAS 86
                   8***********************************************86 PP
2K-box821.4e-27108198999
          K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    + +++ + +q+e+a L+ke++ Lq+++R+l+Ge+L+ Ls k+Lq+Le+qLe slk +R kK+++l+++i+el +k + + een +L+kk+e
  29804.m001536 108 NPASEIKFWQREAASLRKELQYLQESHRQLMGEELSGLSAKDLQNLENQLEMSLKGVRMKKDQILTDEIRELNRKGNLTYEENLKLHKKVE 198
                    678899***********************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-392887IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.3282888IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-3229118IPR002100Transcription factor, MADS-box
CDDcd002651.67E-4429105No hitNo description
PROSITE patternPS0035003084IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-283050IPR002100Transcription factor, MADS-box
PfamPF003195.9E-253784IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-285065IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-286586IPR002100Transcription factor, MADS-box
PfamPF014862.4E-24111197IPR002487Transcription factor, K-box
PROSITE profilePS5129715.561113203IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLDLLDLAKE EKKRKEKEAK IEKEKNKMGR GKIVIRRIDN STSRQVTFSK RRNGLLKKAR  60
ELSILCDAEV GVIIFSSTSK LYDYASTSMN SVIERYNKLK EEQQQLMNPA SEIKFWQREA  120
ASLRKELQYL QESHRQLMGE ELSGLSAKDL QNLENQLEMS LKGVRMKKDQ ILTDEIRELN  180
RKGNLTYEEN LKLHKKVELI YQENVELRKK VNEERDVREA NKSSHPPYTL SNGYDIHAPI  240
HLQLSQPQPH SNQAPPKPMK LGLQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-2228109182MEF2C
5f28_B3e-2228109182MEF2C
5f28_C3e-2228109182MEF2C
5f28_D3e-2228109182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29804.m001536
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012953.10.0MADS-box transcription factor 23 isoform X1
SwissprotQ6EP491e-103MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLB9RX620.0B9RX62_RICCO; Mads box protein, putative
STRINGXP_002518331.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-104AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]