PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29804.m001495 | ||||||||
Common Name | LOC8279162, RCOM_0816450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 386aa MW: 41770.2 Da PI: 6.7616 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.7 | 7e-10 | 188 | 235 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l 29804.m001495 188 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLF 235 9****************************************9888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.3E-15 | 184 | 248 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.392 | 186 | 249 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-8 | 188 | 234 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.88E-10 | 188 | 239 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 6.9E-10 | 188 | 242 | No hit | No description |
CDD | cd14703 | 1.01E-23 | 189 | 238 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MDIQDPNSKT ISNPKDPNHQ NAAPKNGLPN SSSTSIFTLR PGPHHRRAHS EMSFRLPEDV 60 TTMMMDLSPS DPINGGGPGG GGGGGVGGGG GGGGSSVGSF EEMGSEDDLF STYIDVDKLT 120 GGGNGTDQSN NNNNNNDEKN GEGEKGMPTR PKHRHSNSVD GSVCGEVMEA KKAMPPDKLA 180 ELWSLDPKRA KRILANRQSA ARSKERKARY ILELERKVQT LQTEATTLSA QLTLFQRDTT 240 GLSTENIELK LRLQAMEQQA QLRDALNEAL KKEVERLKIA TREIMSPSES FNLGMHQMPY 300 TPSNFFSHPQ QSGSANHPNM QFPPYAHSQT SIPGHHLHQT NSHTFSELMQ NDSLGRLQGL 360 DISSKGPNIV KSEGPSLSAS ESSSTF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29804.m001495 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002518293.1 | 0.0 | transcription factor RF2b | ||||
Swissprot | O22873 | 1e-105 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | B9RX24 | 0.0 | B9RX24_RICCO; Transcription factor RF2b, putative | ||||
STRING | XP_002518293.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 1e-100 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | 29804.m001495 |
Entrez Gene | 8279162 |
Publications ? help Back to Top | |||
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