PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29801.m003176 | ||||||||
Common Name | LOC8275294, RCOM_0813280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 433aa MW: 47029.9 Da PI: 10.3634 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.6 | 2.8e-13 | 355 | 401 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+ + e 29801.m003176 355 RRHRRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNQELQRKQAE 401 689************************************99865444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-11 | 350 | 416 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.484 | 353 | 405 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-11 | 355 | 405 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.48E-9 | 355 | 403 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.7E-13 | 355 | 405 | No hit | No description |
CDD | cd14707 | 2.06E-24 | 355 | 407 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 358 | 373 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MGSHLNFRNF GNASYGEGSG AKPSGISPLA RQGSIYSLTF DEFQNTWGGG LGKDLGSMNM 60 DELLKNIWTA EETQAMTNSV VGVDGSAPGG NLQRQGSLTL PRTLSQKTVD EVWKDLVKES 120 SGVKDRSNVG ANLPQRQQTL GEMTLEEFLA KAGVVREDTQ LIGRPNNGGF FDELSRLKNA 180 NNNNSGLPLE FQQPNRNNAL MGSQLVETNN NLVAAQPLSA GGIRSSQPLP QQHQMHLNQP 240 QPQQQQALFP KSANVAFASP VQLVNNAQLA SPGARGSAVG IADPSLNNNL VHGGGIGIVG 300 LGTRDVKVAT GSPANQISPD MMAKSGTDTP LLSPVPNMFG RGRKASAALE KVIERRHRRM 360 IKNRESAARS RARKQAYTLE LEAEVAKLKE MNQELQRKQA EFMEKQKNEF LETINRQWGS 420 KRPCLQRTLT GPW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00038 | PBM | Transfer from AT4G34000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29801.m003176 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:16284313}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015574413.1 | 0.0 | bZIP transcription factor TRAB1 | ||||
Swissprot | Q9M7Q3 | 1e-118 | AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6 | ||||
TrEMBL | B9RYH3 | 0.0 | B9RYH3_RICCO; DNA binding protein, putative | ||||
STRING | XP_002518757.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1962 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34000.2 | 1e-106 | abscisic acid responsive elements-binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | 29801.m003176 |
Entrez Gene | 8275294 |