PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29794.m003447
Common NameLOC8271207, RCOM_0802980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 1046aa    MW: 115073 Da    PI: 5.2548
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29794.m003447genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-183985148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
    29794.m003447 39 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                     799****************************9.************986 PP
2Myb_DNA-binding64.61.9e-2091137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde ++++v+++G++ W+tIa++++ gR +kqc++rw+++l
    29794.m003447  91 KGPWSKEEDETIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137
                      79******************************.*************97 PP
3Myb_DNA-binding47.83.4e-15143185145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT++E++ l++a++ +G++ W+   + ++ gRt++++k++w+
    29794.m003447 143 KEAWTQQEELALIRAHQIYGNR-WAELTKFLP-GRTDNSIKNHWN 185
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7053485IPR017930Myb domain
SMARTSM007172.2E-153887IPR001005SANT/Myb domain
PfamPF002498.9E-163985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-224097IPR009057Homeodomain-like
SuperFamilySSF466899.33E-164095IPR009057Homeodomain-like
CDDcd001673.66E-144285No hitNo description
PROSITE profilePS5129433.32986141IPR017930Myb domain
SuperFamilySSF466893.15E-3188184IPR009057Homeodomain-like
SMARTSM007172.0E-1990139IPR001005SANT/Myb domain
PfamPF002494.2E-1991137IPR001005SANT/Myb domain
CDDcd001675.51E-1793137No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2798145IPR009057Homeodomain-like
SMARTSM007174.3E-15142190IPR001005SANT/Myb domain
PROSITE profilePS5129418.888142192IPR017930Myb domain
PfamPF002492.2E-13143186IPR001005SANT/Myb domain
CDDcd001671.52E-11145185No hitNo description
Gene3DG3DSA:1.10.10.607.3E-21146192IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MESDKSITAP SDGHGEGVGI QRIRPLHGRT SGPARRSTKG QWTAEEDEIL RKAVQRFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE TIIELVNKYG PKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPS INKEAWTQQE ELALIRAHQI YGNRWAELTK FLPGRTDNSI  180
KNHWNSSVKK KLDSYLASGL LEQFQGLPLV PHQPMPSSSS RVQSSGDDSG FKCGIDAEEI  240
SECSQESIVA GCSQSMSGLG NAVLPSREEF HLTEESGLKK ERSSSPASCS EQYFTSVGDV  300
TFSVPEIPCE MACSSNFLHQ NFSSNTITPA SNDYQYNIQE LPSVSSLELG HDSSGLPTHC  360
MTPNESHDMV NVPFQSSMGF SVPAAMGNIT ENSAKPDHMF ITDDECCQFL FSEAMNGAIF  420
SGNFMKGSNS IANIDSSSYQ SINNQIPETE KVSQPVNSSK SALLVTSCSR SLPAGHSLLS  480
ADDTSIRCDR APNQLTGHTF AAHEQEYITS ANDGFIYTNG TVSSPYDDGT ENTNMQEQHY  540
LKEPSKLVPV NTFTASNDTG KSCPVDEINA QTEQQDAGAL CYEPPRFPSL DIPFLSCELI  600
QSSNDIQQEY SPLGIRQLMM SSMNCITPFR LWDSPSRDDS PNAVLKTAAK TFTTPSILKK  660
RNRDLLSPLS DRRLDKKLEI DMTSSLTKEF SRLDVMLDEN ETHKTSVLSP SSSHKKNEDK  720
ENMDPALEVG QEKGRDCSTF TDHKMSEKDC GSSDTQDSTK HGTVDDDAKT KVHTDASSQI  780
PSGVHVEDSM NDLLFFSPEV GLKSDRAFGP SSRTPKNFCR RILGTLSEHG IASESSSGNS  840
CFVVSSPTIS KKNHESHLVA STSVQSSVPS ENAVDNAGND AGTENLSIFG ETPFKRSIES  900
PSAWKSPWFI NSFLPGPRVD TDISIEDIGY FMSPGDRSYD AIALMKQLSE HTASAFADAL  960
EVLGNETPET ILEKRRSSIQ NMNQENNGAT NSEPENHSHL ASNISTECRT LDFSECGTPG  1020
KGTERGKSST AIIFSSPSSY LLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-70391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-70391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29794.m003447
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516567.10.0transcription factor MYB3R-1 isoform X1
TrEMBLB9RS480.0B9RS48_RICCO; Myb, putative
STRINGXP_002516567.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4