PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29794.m003430
Common NameRCOM_0802400
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family CPP
Protein Properties Length: 629aa    MW: 68540.5 Da    PI: 8.2139
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29794.m003430genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.47.7e-15145184242
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                    + k+CnCk+s+Clk+YCeCfaag++C+  C+C++C+N+ e+
  29794.m003430 145 KAKHCNCKNSRCLKLYCECFAAGVHCTG-CNCTNCHNNVEN 184
                    789*************************.********9875 PP
2TCR50.83.3e-16229268140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  29794.m003430 229 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 268
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.6E-15144184IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.166145269IPR005172CRC domain
PfamPF036385.4E-12147181IPR005172CRC domain
SMARTSM011148.4E-20229270IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12232267IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MEQSQSEAIS DFAPKKLARQ LDFTAVCRAS VNVALSEHSS RLQQQQPPPL PPPPPPPMSQ  60
PQLHLKLQQQ PQPVLQLKLE TPPKQQPQAT QARPQHVMVP PAMRRIPHPV QKLSLHTLQL  120
IKQQSPSSRP RNNIEAKDNS GTPKKAKHCN CKNSRCLKLY CECFAAGVHC TGCNCTNCHN  180
NVENEASRQE AVGAVLERNP EAFKPKIASS PHGSRDAKED AMEVQLVGKH NKGCHCKKSG  240
CLKKYCECFQ ANILCSENCK CMDCKNFEGS EERRALFHDN HNGIVYMQQA ANAAICGAIG  300
SSGYGTPLTS NKRKSEELFG STNRDQLGRR VAKTQQENHQ RNPAASASPL SVPVPHNATA  360
LGSSKFTYKS PLAGILQPQD VKKMCSLLVV LSQEARKAYA GKMDMQPGGD DNRKLESSSS  420
SSIREREDGL MGNNVHKTVP NDHVNGNTAE KDSSDSGKDG GGLENGRPLS PEIDLMCHEQ  480
EMVFREGESA TGMAGLSQNE IQKSSSAQEC SEAYAEQEKL ILTGFRDFLN RLITCGSIKG  540
KLLWSETFLC SNFHETTCSP LARSKTGSHQ EPADGEMIKA GIETLNDKNA YASGIVKSPV  600
LATSASNVDL PIKALLPIGN GEVNPENKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-321352782132Protein lin-54 homolog
5fd3_B7e-321352782132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29794.m003430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-34AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573062.10.0protein tesmin/TSO1-like CXC 7
TrEMBLB9RS310.0B9RS31_RICCO; Transcription factor, putative
STRINGXP_002516550.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-109Tesmin/TSO1-like CXC domain-containing protein