PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29794.m003393
Common NameRCOM_0800340
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 782aa    MW: 85719.3 Da    PI: 6.8639
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29794.m003393genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-192280357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  29794.m003393 22 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 80
                   5679*****************************************************97 PP
2START1571.5e-491693452173
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+++s+g  g+++l +
  29794.m003393 169 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNALSTGngGTIELLY 263
                    7899******************************************************.8888888888*************************** PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                    ++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S++++q+ p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl+
  29794.m003393 264 MQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLNNTQNGPSmppTQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLE 345
                    ******************************************99999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8721781IPR001356Homeobox domain
SMARTSM003895.3E-161985IPR001356Homeobox domain
SuperFamilySSF466893.42E-172185IPR009057Homeodomain-like
CDDcd000865.01E-172282No hitNo description
PfamPF000461.0E-162380IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-192480IPR009057Homeodomain-like
CDDcd146861.05E-674113No hitNo description
PROSITE profilePS5084824.456159345IPR002913START domain
CDDcd088756.10E-72163345No hitNo description
SuperFamilySSF559612.75E-36168353No hitNo description
Gene3DG3DSA:3.30.530.201.8E-21168345IPR023393START-like domain
SMARTSM002341.2E-33168378IPR002913START domain
PfamPF018524.9E-47169346IPR002913START domain
PfamPF086703.0E-33662781IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MMAVTSSVCK DGGSKIAMDN GKYVRYTPEQ VEALERLYHE CPKPSSMRRQ QLIRECPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQAV NRKLTAMNKL LMEENDRLQK QVSQLVYENS  120
YFRQQTQNAT NLATTDTNTS CESVVTSGQH HLTPQHPPRD ASPAGLLSIA EETLAEFLSK  180
ATGTAVEWVQ MPGMKPGPDS IGIVAISHGC PGVAARACGL VGLEPTRVAE ILKDRPSWFR  240
DCRAVDVLNA LSTGNGGTIE LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVICERSLN  300
NTQNGPSMPP TQHFVRAEML PSGYLIRPCE GGGSIIHIVD HVDLEALRHL RQISQEVSQP  360
NVSGWGRRPA ALRALSQRLS KGFNEAINGF TDEGVVHAGN KMMGLNISYA SGFPAMSNGV  420
LCAKASMLLQ NVPPAILLRF LREHRSEWAD TGIDAYAAAA VKAGPCTLPV ARAGNFGGQV  480
ILPLAHTIEH EEFMEVIKLE NMGYREDMIM PGDIFLLQLC SGVDENAVGT CAELVFAPID  540
ASFSDDAPII PSGFRIIPLD SKMDVTSPNR TLDLASALEV GPAGNKASGD LPGHCGSTKS  600
VMTIAFQFAF EIHLQENVAS MARQYVRSVI ASVQRVALAL SPSRFGSNPS LRPPPGTPEA  660
HTLSSWICQS YRCYLGVELL KNEGSESILK SLWHHADALM CCSLKALPVF TFANQAGLDM  720
LETTLVALQD ITLEKIFDDN GRKTLCSEFP QIMQQGFMCL QVASACQYGK TSIYERAVAW  780
KC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29794.m003393
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196230.0AY919623.1 Populus trichocarpa class III HD-Zip protein 8 (HB8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573174.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLB9RRZ50.0B9RRZ5_RICCO; DNA binding protein, putative
STRINGXP_002516514.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]