PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29790.m000843
Common NameLOC8277295, RCOM_0791090
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 311aa    MW: 34483.9 Da    PI: 4.9823
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29790.m000843genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.45.3e-184392255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  29790.m000843 43 RSKHSETEQRRRSKINERFQILRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 92
                   899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.6E-2338114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.2444191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1941119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-164396No hitNo description
PfamPF000102.0E-154392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-134797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVKSAKSHLE EEDEADDYDF SSYRGEIGKG DGKSSEQKAN THRSKHSETE QRRRSKINER  60
FQILRDLIPQ NDQKRDKASF LLEVIEYIQF LQEKLHMYEG PFQGWTQEPT KLTPWKNHHT  120
SVESLVDHSQ VLKNGSAPEV TAMLTNVHNS IESDLGVQAQ MNTFAAVGRG GITAQSVQES  180
VSDAENMAYQ LQSQLWQGQP CASECTAPSN TVNGQEEQMS KSGLVSSTFS QGILDNLTQA  240
LQSSGVDLSQ TSISVQIDVS KQANSGAAFA ASSSKDQESL YLNSQMMEQT GFGSCMEDSD  300
QARKRLRTQK S
Cis-element ? help Back to Top
SourceLink
PlantRegMap29790.m000843
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525945.10.0transcription factor BIM2
RefseqXP_015578906.10.0transcription factor BIM2
TrEMBLB9SIX60.0B9SIX6_RICCO; Transcription factor BIM1, putative
STRINGXP_002525945.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-61BES1-interacting Myc-like protein 2