PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29790.m000831
Common NameRCOM_0790570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 309aa    MW: 35611.7 Da    PI: 9.0817
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29790.m000831genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.43.7e-29201254255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +r+ WtpeLH+rFv +++ LGG+e+AtPk+i+e+mkv+gLt+++vkSHLQkYRl
  29790.m000831 201 NRRSWTPELHARFVVVLHMLGGPEVATPKQIKEAMKVEGLTNDQVKSHLQKYRL 254
                    799**************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.847197257IPR017930Myb domain
SuperFamilySSF466893.58E-16198257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-24200255IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.8E-25200258IPR009057Homeodomain-like
PfamPF002491.1E-7202253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MASSSNARSQ FDLALGLKLS YVPKSIPNLI KDLSRDESSD EVKILILNDY LLKFREELIF  60
AAVFNQELPH CRLLLLDAIE LLKEEIRRIK KGMGLDVADK PGDINILATR KNMSFEGKYS  120
IDLNNPYTDN QHQWSNPTDH HHQHDKMQDG TTLITNQAAS LSLAPSPREK QDGMDLKLRV  180
NDRKLMKYKL KPLTQPICRN NRRSWTPELH ARFVVVLHML GGPEVATPKQ IKEAMKVEGL  240
TNDQVKSHLQ KYRLNSRRAP ADSIRDPSFP SVCLEKFQDP CSWTSEFYHN QIKHWTRDPQ  300
ELFSLDSNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-14202258460Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-14202258460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-14202258460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-14202258460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-14202258460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-14202258460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-14202258460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-14202258460Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29790.m000831
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578914.11e-177transcription factor HHO5-like
TrEMBLB9SIW40.0B9SIW4_RICCO; DNA binding protein, putative
STRINGXP_002525933.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148661012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-23G2-like family protein