PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29788.m000340 | ||||||||
Common Name | LOC8286118, RCOM_0788410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 27851.4 Da PI: 8.1981 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.4e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll++ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl 29788.m000340 10 KGPWTEQEDILLINFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.8 | 5.2e-18 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l +++++++G++ W++Iar+++ gRt++++k++w++++ 29788.m000340 63 RGKMTPQEEKLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.721 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.11E-30 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-17 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-21 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.47E-12 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 26.968 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-17 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-16 | 63 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-24 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.89E-12 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MKMMQDEIRK GPWTEQEDIL LINFVHLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGKMTPQE EKLVLELHAK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKRAMS 120 PSSSSSNSSS GSNITTVNSS SPFPETGEAS FYDTGGPDSS ALGGKSREEV QGGEKGYSMD 180 EIWKDIENTI GPVCDGFSKE GCNFSCPSIV SPPWDYCPEP LWRMDDEESK MLLSYEYGTM 240 FLTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-28 | 1 | 112 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-28 | 1 | 112 | 49 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29788.m000340 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034651 | 7e-62 | KM034651.1 Jatropha curcas clone JcMYB031 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002531120.1 | 0.0 | transcription factor MYB59 isoform X1 | ||||
Swissprot | Q9LX82 | 8e-97 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | B9SYQ1 | 0.0 | B9SYQ1_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002531120.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 4e-95 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | 29788.m000340 |
Entrez Gene | 8286118 |
Publications ? help Back to Top | |||
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