PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29782.m000119 | ||||||||
Common Name | LOC8273018, RCOM_0779180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 27758.5 Da PI: 10.0288 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.9 | 2e-26 | 9 | 60 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeyss 51 k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs++g k++e++s 29782.m000119 9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGrKFHEFIS 60 68*****************************************956999975 PP | |||||||
2 | K-box | 86.9 | 4.2e-29 | 72 | 170 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 yqk+ g +l+ +++e++q +l+kL++ +++L+r +R+++GedL++Ls+ eL+ Leq++ +l iR++K++++ +q+++ +kke++l e++++L + 29782.m000119 72 YQKTLGIDLWITHYERMQDHLKKLNDINNKLRRDIRQRMGEDLNDLSFDELRGLEQRMAPALHMIRERKYHFIETQTNTKRKKERNLVERHRELLQ 167 78899999**************************************************************************************99 PP K-box 97 kle 99 ++e 29782.m000119 168 RYE 170 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.7E-38 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.114 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-36 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.00E-37 | 2 | 81 | No hit | No description |
PRINTS | PR00404 | 3.5E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-22 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-20 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.071 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN SGRKFHEFIS 60 PGTTTKKIFD QYQKTLGIDL WITHYERMQD HLKKLNDINN KLRRDIRQRM GEDLNDLSFD 120 ELRGLEQRMA PALHMIRERK YHFIETQTNT KRKKERNLVE RHRELLQRYE ANCEDPQYGL 180 VDYEGDYESA IALANGASNL YSFRLHHGHP EPPNLHXTGK SHIFILISLH KHNLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29782.m000119 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002533305.1 | 1e-175 | floral homeotic protein DEFICIENS | ||||
Swissprot | Q003J2 | 1e-117 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | B9T4Y6 | 1e-174 | B9T4Y6_RICCO; Floral homeotic protein DEFICIENS, putative | ||||
STRING | XP_002533305.1 | 1e-175 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-72 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | 29782.m000119 |
Entrez Gene | 8273018 |
Publications ? help Back to Top | |||
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