 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
29780.m001393 |
| Common Name | LOC8268150, RCOM_0778050 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 283aa MW: 31430.9 Da PI: 10.1801 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 29780.m001393 | genome | JCVI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 347.9 | 2.3e-106 | 9 | 283 | 6 | 301 |
GAGA_bind 6 sre.rnkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllv 87
+++ rn+gyyep+ +k +lglqlmss+a+rd+k r+ n + + ++a+++rd m++ +rd+++++ ++kl+++l+
29780.m001393 9 NMNiRNWGYYEPN--FKGHLGLQLMSSMADRDTKHflpgRDPNGIMVGANGAFHPRDcvvsdapgpMNY-MRDSWISQ--------REKLFNMLPP 93
4567********9..******************************************************.********........78999**995 PP
GAGA_bind 88 enslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+ ++ vl++t+ ++slq l+++ r+e+ a iee ++++ke+++ kkrq++ pk++kakk++k +k++++++
29780.m001393 94 NP--------NYAVLPETSGAHSLQV-----LQPPNPS-RDER---AGRIEE-PSVHKESSQLKKRQSGGAPKTPKAKKPRK----PKDNSNNAV- 166
55........4899********9999.....5554444.3332...344444.77788889999999999***999999999....333344444. PP
GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279
+r+k kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++SvyPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy++
29780.m001393 167 -QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSVYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNF 261
.689******************************************************************************************** PP
GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
+np+DL++hWAkHGtnkfvtir
29780.m001393 262 ANPIDLRTHWAKHGTNKFVTIR 283
*********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDDPEDTLNM NIRNWGYYEP NFKGHLGLQL MSSMADRDTK HFLPGRDPNG IMVGANGAFH 60
PRDCVVSDAP GPMNYMRDSW ISQREKLFNM LPPNPNYAVL PETSGAHSLQ VLQPPNPSRD 120
ERAGRIEEPS VHKESSQLKK RQSGGAPKTP KAKKPRKPKD NSNNAVQRVK PAKKSMDVVI 180
NGIDMDISGI PIPVCSCTGS PQQCYRWGCG GWQSACCTTN VSVYPLPMST KRRGARIAGR 240
KMSQGAFKKV LEKLAAEGYN FANPIDLRTH WAKHGTNKFV TIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
