PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29780.m001390
Common NameLOC8268147, RCOM_0777820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 477aa    MW: 53342.7 Da    PI: 8.492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29780.m001390genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.7e-067092123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C++C++ F r  nL+ H r+H
  29780.m001390 70 YVCEICNQGFQRDQNLQMHRRRH 92
                   9*********************9 PP
2zf-C2H215.93.6e-05147169123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k +  +s++k H++t+
  29780.m001390 147 WVCEKCSKGYAVQSDYKAHLKTC 169
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.88E-56793No hitNo description
Gene3DG3DSA:3.30.160.602.0E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.977092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355170111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-4138168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035560147174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLDKNTTTTT TTTTTLSAPI SPSSDPFSAA LDNGVTNSNN KRKRKPAGTP DPDAEVVSLS  60
PRTLLESDRY VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETQEVKKRV YVCPEPSCLH  120
HDPCHALGDL VGIKKHFRRK HSNHKQWVCE KCSKGYAVQS DYKAHLKTCG TRGHSCDCGR  180
VFSSTWLFRV ESFIEHQDAC TVRRTQPDQL QALQPACSSR TASSTSPSSD ANFSISGPLP  240
GLTMPKPTAD NQQPAIFLCS SDRNNHASTS NHHHQQQPPQ HQKQQEHNLE LQLLPSSVST  300
RLSSSQNHDD QRYHPTNLKL SIGSSSSNDC SEKNELNEKA NLDANREKSV GDPALEAAKV  360
KEFANEQLRL AMAEKAYAED ARQQAKRQLE MAELEFANAK RIRQQAQSEL EKAQVLREQA  420
TKKISSTMMQ ITCQACKQQF QAPAPVVAPA DETSLAMSYM SSAQLREKES DIIPNCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-16145213568Zinc finger protein JACKDAW
5b3h_F5e-16145213568Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29780.m001390
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521906.10.0protein SHOOT GRAVITROPISM 5 isoform X1
SwissprotQ9C9X71e-149IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLB9S7D70.0B9S7D7_RICCO; Nucleic acid binding protein, putative
STRINGXP_002521906.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-144indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]