PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29780.m001358

Common Name

RCOM_0775400

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 446aa MW: 49195.2 Da PI: 7.1281

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29780.m001358	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.7e-05	343	375	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq 29780.m001358 343 DRITALQQIVSPF-----GKTDTASVLLEAIQYIKFLQ 375 7788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.461	325	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-10	340	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-9	340	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.60E-5	343	379	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MAQECSGSSV AISSSTPPAV GCWWDLHHHH ASSLSPWHQP NPSSNSSCEE DVSMSTSFTN 60 ASNHSGLTVE SSRRLVEPAA SSPNELIGEH ASDSQLWSHI LLGVGSNGEL QNNQDVGENL 120 LDALSSRSIN SSGIFEPACD YLKKIDHNWE FTSSFNNFEK HINGFSTDHH HQSLIESDQR 180 VTKLSNLVEN DHEHQNHHRH VEAPAAGYVL RRSTFNNNGA GVGYHIGLNN GSVMADNSKY 240 YYGTTENTSA RTFNDGLTFN GRLNKPLIDI QGHKPCFKSL NLSDCRKQGL QASSQTVRGQ 300 GNSSEGKKKR YEDTSETIPK KPKHESSTAS SVKTQAPKVK LGDRITALQQ IVSPFGKTDT 360 ASVLLEAIQY IKFLQEQVQL LSNPYMKSNS HKDPWGGLDK KAQGDAKVDL RSRGLCLVPI 420 SCTPQIYHEN TGSDYWTPTY RGCLYR

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MAQECSGSSV AISSSTPPAV GCWWDLHHHH ASSLSPWHQP NPSSNSSCEE DVSMSTSFTN  60
ASNHSGLTVE SSRRLVEPAA SSPNELIGEH ASDSQLWSHI LLGVGSNGEL QNNQDVGENL  120
LDALSSRSIN SSGIFEPACD YLKKIDHNWE FTSSFNNFEK HINGFSTDHH HQSLIESDQR  180
VTKLSNLVEN DHEHQNHHRH VEAPAAGYVL RRSTFNNNGA GVGYHIGLNN GSVMADNSKY  240
YYGTTENTSA RTFNDGLTFN GRLNKPLIDI QGHKPCFKSL NLSDCRKQGL QASSQTVRGQ  300
GNSSEGKKKR YEDTSETIPK KPKHESSTAS SVKTQAPKVK LGDRITALQQ IVSPFGKTDT  360
ASVLLEAIQY IKFLQEQVQL LSNPYMKSNS HKDPWGGLDK KAQGDAKVDL RSRGLCLVPI  420
SCTPQIYHEN TGSDYWTPTY RGCLYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29780.m001358

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015576451.1	0.0	transcription factor bHLH111
TrEMBL	B9S7A5	0.0	B9S7A5_RICCO; Uncharacterized protein
STRING	XP_002521874.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	1e-76	bHLH family protein

Link Out ? help Back to Top
Phytozome	29780.m001358