PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29776.m000469

Common Name

RCOM_0770230

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

LSD

Protein Properties

Length: 405aa MW: 43792.8 Da PI: 9.1469

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29776.m000469	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38	2.8e-12	239	263	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGAp+V+CalC t+ 29776.m000469 239 CNGCRSILLYPRGAPNVCCALCSTI 263 **********************997 PP
2	zf-LSD1	42	1.5e-13	278	302	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ +rGA+sVRC++C+tV 29776.m000469 278 CGGCRTLLMHTRGATSVRCSCCHTV 302 ************************9 PP
3	zf-LSD1	39.3	1.1e-12	316	340	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Crt+L YP+GApsV+CalC+ V 29776.m000469 316 CRNCRTTLVYPYGAPSVKCALCHYV 340 99********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03357	2.1E-32	18	185	IPR005024	Snf7 family
TIGRFAMs	TIGR01053	7.5E-10	236	264	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.3E-10	239	263	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.4E-15	275	304	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.7E-11	278	302	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:3.30.40.10	6.7E-4	292	345	IPR013083	Zinc finger, RING/FYVE/PHD-type
TIGRFAMs	TIGR01053	2.1E-10	313	343	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.3E-12	316	340	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007034	Biological Process	vacuolar transport

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MNIFKKKTSP KDALRTSKRE MAVATRGIER EIASLQLEEK KLVAEIKQTA KTGNEAATKI 60 LARQLVRLRQ QITNLQGSRA QIRGVATHTQ ALYASTSIST GMKGATKAMV AMNKQMAPTK 120 QVKVIKEFQK QSAQLDMTIE MMSEAIDETL DKDEAEEETE ELTNQVLDEI GVDIASQLSS 180 APKGRIASKN APNVVKRYAV IICFEEFWLF PSRFLLLKAL LGDCVSSSII PAMQGQIMCN 240 GCRSILLYPR GAPNVCCALC STITAAPPPG MEMAQLICGG CRTLLMHTRG ATSVRCSCCH 300 TVNLAPVSGQ AAHINCRNCR TTLVYPYGAP SVKCALCHYV TNVSMGNVRV ALPTNRPNGT 360 TGMTPSTSTS TSQSQTQTVV VENPMSVDES GKLVSNVVVG ITNKK

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MNIFKKKTSP KDALRTSKRE MAVATRGIER EIASLQLEEK KLVAEIKQTA KTGNEAATKI  60
LARQLVRLRQ QITNLQGSRA QIRGVATHTQ ALYASTSIST GMKGATKAMV AMNKQMAPTK  120
QVKVIKEFQK QSAQLDMTIE MMSEAIDETL DKDEAEEETE ELTNQVLDEI GVDIASQLSS  180
APKGRIASKN APNVVKRYAV IICFEEFWLF PSRFLLLKAL LGDCVSSSII PAMQGQIMCN  240
GCRSILLYPR GAPNVCCALC STITAAPPPG MEMAQLICGG CRTLLMHTRG ATSVRCSCCH  300
TVNLAPVSGQ AAHINCRNCR TTLVYPYGAP SVKCALCHYV TNVSMGNVRV ALPTNRPNGT  360
TGMTPSTSTS TSQSQTQTVV VENPMSVDES GKLVSNVVVG ITNKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29776.m000469

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022714636.1	0.0	vacuolar protein sorting-associated protein 2 homolog 2-like
TrEMBL	B9SV62	0.0	B9SV62_RICCO; Charged multivesicular body protein 2b-B, putative
STRING	XP_002529881.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	3e-65	LSD family protein

Link Out ? help Back to Top
Phytozome	29776.m000469