PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29762.m000500
Common NameRCOM_0753110
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family DBB
Protein Properties Length: 204aa    MW: 22167.2 Da    PI: 6.9167
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29762.m000500genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-07433534
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                    C+++e+  +  fC  ++  lC  C ++ H
  29762.m000500  4 LCDNCESAAAAVFCAADEAALCGACDEKVH 33
                   7**************************998 PP
2zf-B_box30.47.8e-105291237
       zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                   + ++C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  29762.m000500 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDVTVHVGgkrtH 91
                   5799****************************96655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.1E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.281147IPR000315B-box-type zinc finger
PfamPF006436.9E-6341IPR000315B-box-type zinc finger
SuperFamilySSF578457.33E-54886No hitNo description
SMARTSM003365.9E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.0155196IPR000315B-box-type zinc finger
PfamPF006433.5E-85291IPR000315B-box-type zinc finger
CDDcd000211.35E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MRTLCDNCES AAAAVFCAAD EAALCGACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD VTVHVGGKRT HGRYLLLRQR VEFPGDKPDH TAAEAMDPGE  120
TKKGQNPPPK LSLGENHQQN HRVSPLSLPD SNCDGHGKMD NKLIDLNIKP HRVHDHAPSD  180
QVDVLGRFQI VAKKLAPTCG TLVH
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29762.m000500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581028.11e-132B-box zinc finger protein 18
SwissprotC0SVM52e-71BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB9SU021e-148B9SU02_RICCO; Salt-tolerance protein, putative
STRINGXP_002529471.11e-149(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-63DBB family protein