PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29742.m001397 | ||||||||
Common Name | RCOM_0716960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | ARF | ||||||||
Protein Properties | Length: 667aa MW: 74784.7 Da PI: 7.2957 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.5e-23 | 139 | 239 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +k+a+e+ ++++++ +l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF ++++ 29742.m001397 139 FCKILTASDTSTHGGFSVLRKHATEClppldmnQSIPTQ--ELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RSDN 230 99****************************976555544..8************************************************..4478 PP E..EEEEE- CS B3 90 felvvkvfr 98 +el+v+v+r 29742.m001397 231 GELRVGVRR 239 999****98 PP | |||||||
2 | Auxin_resp | 103.4 | 2.8e-34 | 265 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++ +s+GmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk 29742.m001397 265 ASHAVTTQTLFVVYYKPRT--SQFIIGLNKYLEAVNHGFSLGMRFKMRFEGEDSPERRFMGTIVGVGDFSP-EWSGSKWRSLK 344 689***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-40 | 130 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-40 | 132 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.48E-20 | 137 | 239 | No hit | No description |
SMART | SM01019 | 6.0E-22 | 139 | 241 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.294 | 139 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-21 | 139 | 239 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.2E-32 | 265 | 344 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.6E-7 | 524 | 588 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.37E-11 | 548 | 628 | No hit | No description |
PROSITE profile | PS51745 | 24.719 | 552 | 633 | IPR000270 | PB1 domain |
Pfam | PF02309 | 4.2E-7 | 597 | 641 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MLRVIISGVV RFLMAKEDEM ICIQSYGRHV QVHWWRYQDL EREFSTFLKV TWNRVLWSQS 60 ISDYLQLEAS TNQELTQQIP KFNLPSKILC RVVHIHLLAE QETDEVYAQI TLHPEVDQTE 120 PTSPDQCTPE PQKRPVHSFC KILTASDTST HGGFSVLRKH ATECLPPLDM NQSIPTQELV 180 AKDLHGYEWR FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRSDN GELRVGVRRL 240 ARQQSPMPSS VISSQSMHLG VLATASHAVT TQTLFVVYYK PRTSQFIIGL NKYLEAVNHG 300 FSLGMRFKMR FEGEDSPERR FMGTIVGVGD FSPEWSGSKW RSLKIQWDEP ATVQRPDRVS 360 PWEIEPFAAS ASVNLPQTVG KSKRPRPVDT TASDNCLLNG SSCSSRVRSE GIWPHSPHMD 420 VSLSLFSDSA DDNRTITTQS VISGYAPAFP SRQSNSLVHE QVEKGKKYEN SVGCRLFGID 480 LISNSSTAAP PEKESLGLKM DSNGPRGSAP AVDGTDEAQN VDVSKASKEQ KEAASEVMPK 540 ETHSKPGTTS TRTRTKVQMQ GVAVGRAVDL TALKGYGDLI KELEELFEIK GELSTREKWA 600 VVFTDDEGDM MLVGDDPWRE FCKMVRKILI YSSEEAKKLK TRCKLLASSL EGEGAIASLD 660 SEHRSDT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-153 | 66 | 367 | 51 | 355 | Auxin response factor 1 |
4ldw_A | 1e-153 | 66 | 367 | 51 | 355 | Auxin response factor 1 |
4ldw_B | 1e-153 | 66 | 367 | 51 | 355 | Auxin response factor 1 |
4ldx_A | 1e-153 | 66 | 367 | 51 | 355 | Auxin response factor 1 |
4ldx_B | 1e-153 | 66 | 367 | 51 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 382 | 386 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29742.m001397 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015577377.1 | 0.0 | auxin response factor 11 | ||||
Swissprot | Q9ZPY6 | 0.0 | ARFK_ARATH; Auxin response factor 11 | ||||
TrEMBL | B9SBF6 | 0.0 | B9SBF6_RICCO; Auxin response factor | ||||
STRING | XP_002523326.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46530.1 | 0.0 | auxin response factor 11 |
Link Out ? help Back to Top | |
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Phytozome | 29742.m001397 |
Publications ? help Back to Top | |||
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