PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29739.m003775 | ||||||||
Common Name | RCOM_0712270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GRF | ||||||||
Protein Properties | Length: 253aa MW: 28389.1 Da PI: 9.2018 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.5 | 3.2e-25 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e 29739.m003775 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120 79***************************************997 PP | |||||||
2 | QLQ | 57.9 | 3.1e-20 | 9 | 43 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l++Ky++++ P+P++Ll+ i+ 29739.m003775 9 PFTASQWQELEHQALIFKYMVSGIPIPSDLLFTIK 43 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.3E-11 | 8 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.3E-15 | 9 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.944 | 9 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.4E-21 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMSGTNKFPF TASQWQELEH QALIFKYMVS GIPIPSDLLF TIKRSCLDSP LSSKLFPRQP 60 PHIGWSCFQM GLGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE 120 VANQTATTTN PTVSSVTKNH SNLLTPPSHS LSLLSSDQSH LHYAGYHSHL NHQFLSSSHT 180 TSSRPPGIGL SPQDNSTPLL LDSSGSCSLA SADYRNAYGL KEEVDEHAFF SETSGSMRSY 240 LVHLWMMLGN LLH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29739.m003775 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009846 | 3e-52 | AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002516290.2 | 1e-177 | LOW QUALITY PROTEIN: growth-regulating factor 1 | ||||
TrEMBL | B9RRC1 | 0.0 | B9RRC1_RICCO; Uncharacterized protein | ||||
STRING | XP_002516290.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 5e-57 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | 29739.m003775 |