PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29739.m003684
Common NameRCOM_0708760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 592aa    MW: 64591.5 Da    PI: 5.0847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29739.m003684genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.8e-12362407555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR++i +++ +L+el+P++      K++Ka++L + +eY+k Lq
  29739.m003684 362 HSIAERLRREKIAERMKNLQELVPNS-----SKVDKASMLDEIIEYVKFLQ 407
                    99***********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF005628.6E-6157IPR007120DNA-directed RNA polymerase, subunit 2, domain 6
Gene3DG3DSA:2.40.270.103.8E-5116IPR007120DNA-directed RNA polymerase, subunit 2, domain 6
SuperFamilySSF644844.58E-12168No hitNo description
Gene3DG3DSA:2.40.50.1501.3E-72055IPR014724RNA polymerase Rpb2, OB-fold
CDDcd000831.98E-12355411No hitNo description
SuperFamilySSF474592.49E-16355417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-16359416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9362407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MPWEGYNFED AVLISERLTH VTSQGPERIT NEIPHLEAHL LRNLDKNGIV MLGSWWLVMD  60
EYIDRLFSSS PWADGDAKER SCWDYSETGQ LNVSVSTSLR LHENDKGNSL LSVTSSEQNI  120
DCLPAQDTPS LGLDSESDYV VDKGLFSGKA QSQKEGQNCN HDPSPMINGS LKMKNMGLQY  180
DTALPTLNSV GLSYSKQLPV LDDLTSPLSF TKANRAGLND SARFEYQRSF KDVQNPSSMT  240
QLWPSTSFED VSSLSAAMGQ DTTQQFDLQG NLGDDLDFLG RRYISMDNIL QLDKLSASVV  300
SKDKENLQGY PLSRFTVGSN MTMTTNGVSY LSQTASTAPA ASCNGTGKPR VRARRGQATD  360
PHSIAERLRR EKIAERMKNL QELVPNSSKV DKASMLDEII EYVKFLQLQV KVLSMSRLGA  420
TGAVIPLITD GQAEGSNSLS LSTSAGLGID VAPSSDQIAF EHEVLKLLES NVTKAIQYLQ  480
GKGFCLMPIA LAAAISSGKA SLSCNSPDDK KKIRFNTDIV HDNNGSSRSS SSSSCNFSGT  540
ETCQVSYDCN IMTEQLGSKG MVGNGCNGIL KLEDAKNQFL RELKPKIVSN LG
Cis-element ? help Back to Top
SourceLink
PlantRegMap29739.m003684
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9375882e-54JF937588.1 Ricinus communis cultivar Hale chloroplast, complete genome.
GenBankJF9405152e-54JF940515.1 UNVERIFIED: Ricinus communis bio-material USDA:GRIN:PI 209326 chloroplast partial sequence.
GenBankJF9405162e-54JF940516.1 UNVERIFIED: Ricinus communis bio-material USDA:GRIN:PI 255238 chloroplast partial sequence.
GenBankJF9405172e-54JF940517.1 UNVERIFIED: Ricinus communis bio-material USDA:GRIN:PI 197048 chloroplast partial sequence.
GenBankJF9405182e-54JF940518.1 UNVERIFIED: Ricinus communis bio-material USDA:GRIN:PI 193851 chloroplast partial sequence.
GenBankJF9405192e-54JF940519.1 UNVERIFIED: Ricinus communis bio-material USDA:GRIN:PI 280219 chloroplast partial sequence.
GenBankJF9405212e-54JF940521.1 UNVERIFIED: Ricinus communis bio-material USDA:GRIN:PI 209132 chloroplast partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572945.10.0transcription factor bHLH110 isoform X1
RefseqXP_015572946.10.0transcription factor bHLH110 isoform X1
RefseqXP_015572947.10.0transcription factor bHLH110 isoform X1
TrEMBLB9RR320.0B9RR32_RICCO; DNA-directed RNA polymerase beta chain, putative
STRINGXP_002516201.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150611314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-57LJRHL1-like 3