PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29736.m002023
Common NameRCOM_0697770
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 562aa    MW: 61641 Da    PI: 7.2882
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29736.m002023genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15.1e-30257316159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+a+d +v+++tYeg+Hnh+
  29736.m002023 257 MNDGCQWRKYGQKIAKGNPCPRAYYRCTASpTCPVRKQVQRCAKDMSVLITTYEGTHNHP 316
                    58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31242318IPR003657WRKY domain
SuperFamilySSF1182907.98E-27250318IPR003657WRKY domain
PROSITE profilePS5081128.518252318IPR003657WRKY domain
SMARTSM007741.8E-35257317IPR003657WRKY domain
PfamPF031061.4E-26258316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
METDKSGSLE KPDHCANTAA VQEEKKMKSS GDDEEVVVAE INKEEGDVNH VINIKQEENI  60
RKRPSSTMNK DLTSINHEDQ LRSTKAKIGE VKEENERLKQ LLSKILNDYQ SLQKHFCKVV  120
QEEEEKKPAK LTTAHQKNQE PELVSLSLGR SSSSEPKKEE KKSSNLSDGN EDDELNNKGL  180
SLGLDCKFEP DSSVTVKNNA SSENSFDEDP KEEEPTETWS PNKIRKTTIT PDDEAMQQNQ  240
IKKTRVSVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTASPTCP VRKQVQRCAK  300
DMSVLITTYE GTHNHPLPLS ATAMASTTSA AASMIQSRSS TSAQPGSSIS APSSISTSNG  360
LNFSLSQNSR PQQIYFPNSS ISTSNSHPTV TLDLTTAPST TTAQYFNRFS SAPRCLNFSS  420
SPSSTSLDQS NINTLQSLWN PSSYSTYGTV PLNRNYVEKQ PTPGNHHVYQ PYMHIINSET  480
TPPPNQQSLT ESIAAATKMI TSNPNFSNSN GIGCASSYLN KSATSLSSQQ GSLVLFPGSL  540
PFSSATRSAS ESPANSRDHN KG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20244318174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29736.m002023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013298.10.0probable WRKY transcription factor 72 isoform X1
TrEMBLB9S2A50.0B9S2A5_RICCO; WRKY transcription factor, putative
STRINGXP_002520124.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-65WRKY DNA-binding protein 72