PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29729.m002363

Common Name

LOC8259549, RCOM_0689740

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bZIP

Protein Properties

Length: 355aa MW: 39712.4 Da PI: 6.4591

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29729.m002363	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.5e-11	155	207	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l + 29729.m002363 155 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTT 207 9****************************************999877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-16	151	215	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.622	153	216	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.4E-9	155	204	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.4E-11	155	209	No hit	No description
SuperFamily	SSF57959	1.27E-10	155	209	No hit	No description
CDD	cd14703	1.92E-24	156	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MQDPNPKPNP TQETQIFPPH QHQHQQQQQP FSFHRRAHSE VHFRLPEDLD LVPDPFEGPS 60 GSSFDELGSE DDIFCAYMGI EKLGSRPQEG SSSALNIDNG DGGLHVPSEV DADKNARPRH 120 RYSNSVDGSS MLESIEAKKA MAPDKLAELW SLDPKRAKRI IANRQSAARS KERKARYISE 180 LERKVQTLQT EATTLSAQLT LFQRDTTGLT TENTELKLRL QAMEQQAHLR DALNDALKKE 240 VERLKFATGE MMTPTDSYHL GMNHMPYTQS SFFPPQSQPR PVNTQNMQMP QFHPFQSNML 300 TSHQAIAAPS HSHAFPEMLP LDPLGRLQGL DIGSRSTVLV KSEGPSISAS ESSSI

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MQDPNPKPNP TQETQIFPPH QHQHQQQQQP FSFHRRAHSE VHFRLPEDLD LVPDPFEGPS  60
GSSFDELGSE DDIFCAYMGI EKLGSRPQEG SSSALNIDNG DGGLHVPSEV DADKNARPRH  120
RYSNSVDGSS MLESIEAKKA MAPDKLAELW SLDPKRAKRI IANRQSAARS KERKARYISE  180
LERKVQTLQT EATTLSAQLT LFQRDTTGLT TENTELKLRL QAMEQQAHLR DALNDALKKE  240
VERLKFATGE MMTPTDSYHL GMNHMPYTQS SFFPPQSQPR PVNTQNMQMP QFHPFQSNML  300
TSHQAIAAPS HSHAFPEMLP LDPLGRLQGL DIGSRSTVLV KSEGPSISAS ESSSI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29729.m002363

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002520865.1	0.0	bZIP transcription factor 18
Swissprot	O22873	1e-117	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	B9S4E6	0.0	B9S4E6_RICCO; Transcription factor RF2b, putative
STRING	XP_002520865.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-118	bZIP family protein

Link Out ? help Back to Top
Phytozome	29729.m002363
Entrez Gene	8259549

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]