PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29725.m000235
Common NameLOC8279111, RCOM_0674920
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 314aa    MW: 35940.6 Da    PI: 7.7109
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29725.m000235genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.43.2e-54101391128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPtdeel+ +yLkkkv+ + ++l +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++
  29725.m000235  10 VPPGFRFHPTDEELLYYYLKKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIH 104
                    69****************************.9***************952444443456************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  29725.m000235 105 LSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139
                    *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-603159IPR003441NAC domain
PROSITE profilePS5100558.14410159IPR003441NAC domain
PfamPF023653.1E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMAGNGQLSV PPGFRFHPTD EELLYYYLKK KVSYEAIDLD VIREVDLNKL EPWDLKEKCR  60
IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIHLSNSKR IGMRKTLVFY  120
TGRAPHGQKT DWIMHEYRLD DDNSEVQEDG WVVCRVFKKK NQTRGFLPEA AQEEHFSHMK  180
AGASSVSMEP KQHHMQALYD YNFDGSMHLP QLFSPESAAV PPSFVTPLSL NTMDIECSQN  240
LLRLTSTSCG LVQPERFHGD WSFLDKLLAS HQSLDHQGKG NPSSQVVDMG ASVHHQKFPF  300
PYLGCETDIM RFSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-52716414170NO APICAL MERISTEM PROTEIN
1ut4_B4e-52716414170NO APICAL MERISTEM PROTEIN
1ut7_A4e-52716414170NO APICAL MERISTEM PROTEIN
1ut7_B4e-52716414170NO APICAL MERISTEM PROTEIN
3swm_A4e-52716417173NAC domain-containing protein 19
3swm_B4e-52716417173NAC domain-containing protein 19
3swm_C4e-52716417173NAC domain-containing protein 19
3swm_D4e-52716417173NAC domain-containing protein 19
3swp_A4e-52716417173NAC domain-containing protein 19
3swp_B4e-52716417173NAC domain-containing protein 19
3swp_C4e-52716417173NAC domain-containing protein 19
3swp_D4e-52716417173NAC domain-containing protein 19
4dul_A4e-52716414170NAC domain-containing protein 19
4dul_B4e-52716414170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29725.m000235
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051890.0KR605189.1 Manihot esculenta NAC transcription factors 51 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521498.10.0protein SOMBRERO isoform X2
SwissprotQ9MA171e-125SMB_ARATH; Protein SOMBRERO
TrEMBLB9S6790.0B9S679_RICCO; NAC domain-containing protein, putative
STRINGXP_002521498.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-109NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]