PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29706.m001307
Common NameLOC8284676, RCOM_0654210
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YA
Protein Properties Length: 335aa    MW: 36863.3 Da    PI: 8.6238
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29706.m001307genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA994.9e-31176232158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    dep++VNaKQy +Il+RR  Rakle+++kl +k+rkpylheSRh hAlrR+RgsgGrF
  29706.m001307 176 DEPIFVNAKQYAAILRRRRYRAKLEAQNKL-IKARKPYLHESRHLHALRRARGSGGRF 232
                    79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.7E-36174235IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.424175235IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.5E-26177232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.1E-22178200IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860180200IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.1E-22209232IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MFMKMHNLCK KESGMCSLLS TSPYIVGRQL LGNSTESTVH QSSLSESLGL TMGVPHQQFH  60
GSKKLTFQFQ DQDSSSTQST GQSYPEVASM GEGFNESHEK AEGGHVKLVS LMGTQDFIFP  120
SQFDCSQSVA RVPLHFTEPY FGGLLAAYGP QSMIHHPQMF GMTSARVPLP PVFTEDEPIF  180
VNAKQYAAIL RRRRYRAKLE AQNKLIKARK PYLHESRHLH ALRRARGSGG RFLNAKKLED  240
SNPTPASHGL DGAGTQFHLA GNISESEVHH PENHRDGAST TSCSDVTSAS NSDDIFQQQT  300
EFKFSGYPSH FVGTMRGRSV GMHGGGSQHH VSVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-18176236262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29706.m001307
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576131.10.0nuclear transcription factor Y subunit A-3 isoform X2
TrEMBLB9S5T30.0B9S5T3_RICCO; Nuclear transcription factor Y subunit A-3, putative
STRINGXP_002521352.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-64nuclear factor Y, subunit A3