PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29685.m000503

Common Name

RCOM_0619330

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 684aa MW: 78622.5 Da PI: 7.9945

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29685.m000503	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.8e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel 29685.m000503 63 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSSENKPQRNRKSSRCGCQAYMRISKTTelgAPEWRVTGFANHHNHELL 156 6************9998877356667999*********999999*****************99888889***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-18	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.9E-19	279	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	561	594	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-7	564	592	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	569	596	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MMSEEDGQML MVYDDPSDQR SLSLDDTSSA EESPDETRLS LETTNDAIPY IGQRFATHDA 60 AYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTSS ENKPQRNRKS 120 SRCGCQAYMR ISKTTELGAP EWRVTGFANH HNHELLEQNQ VRFLPAYRTI SDTDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEDESI DLLRMCRNIK 240 EKDPNFKYEY TLDSNNRLEN IAWSYASSIQ SYDIFGDAVV FDTTHRLTAF DMPIGIWVGV 300 NNYGMPCFFG CVLLQEETLR TLSWALKAFL GFMNGKAPQT ISTDQNSCLK EAIELEMPTT 360 KHALCMWMIV GKFPSWFNAV LGERYNEWKA EFHRLYNLES IEDFELGWRD MVDSYGMHNN 420 RHIVNLYALR THWALPYLRS HFLAGMNAAG HSKSINAFIQ RFLNAQTRLA HFVEQFRKQV 480 AVAVDFKDQA AEQQTMQQNL QNISLKTGAP MESHAASVLT PYAFSKLQEQ LVLAAHYASF 540 QMEDGFLVRH HTKLEGGRKV YWVPREGIIS CSCHQFEFSG ILCRHALRVL STGNCFQIPE 600 RYLPIRWRRI STSPGKLLHS APNGHGERMQ LLQNMVSTLI NESAKSKERL EIATDQLSIL 660 ISRIREQPVP SQGVRDIASI HRKL

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MMSEEDGQML MVYDDPSDQR SLSLDDTSSA EESPDETRLS LETTNDAIPY IGQRFATHDA  60
AYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTSS ENKPQRNRKS  120
SRCGCQAYMR ISKTTELGAP EWRVTGFANH HNHELLEQNQ VRFLPAYRTI SDTDKSRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDPEDESI DLLRMCRNIK  240
EKDPNFKYEY TLDSNNRLEN IAWSYASSIQ SYDIFGDAVV FDTTHRLTAF DMPIGIWVGV  300
NNYGMPCFFG CVLLQEETLR TLSWALKAFL GFMNGKAPQT ISTDQNSCLK EAIELEMPTT  360
KHALCMWMIV GKFPSWFNAV LGERYNEWKA EFHRLYNLES IEDFELGWRD MVDSYGMHNN  420
RHIVNLYALR THWALPYLRS HFLAGMNAAG HSKSINAFIQ RFLNAQTRLA HFVEQFRKQV  480
AVAVDFKDQA AEQQTMQQNL QNISLKTGAP MESHAASVLT PYAFSKLQEQ LVLAAHYASF  540
QMEDGFLVRH HTKLEGGRKV YWVPREGIIS CSCHQFEFSG ILCRHALRVL STGNCFQIPE  600
RYLPIRWRRI STSPGKLLHS APNGHGERMQ LLQNMVSTLI NESAKSKERL EIATDQLSIL  660
ISRIREQPVP SQGVRDIASI HRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29685.m000503

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015580664.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_015580665.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	B9SS96	0.0	B9SS96_RICCO; Uncharacterized protein
STRING	XP_002528865.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	29685.m000503

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]