PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29681.m001315 | ||||||||
Common Name | LOC8276379, RCOM_0611570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 472aa MW: 52548 Da PI: 6.5135 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 138 | 184 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l 29681.m001315 138 KGQWTEEEDRKLIRLVKQFGVRKWAQIAEKLA-GRAGKQCRERWHNHL 184 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.4e-17 | 190 | 232 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W++eE+ +lv+a+ + G++ W+ Ia+ ++ gRt++ +k++w+ 29681.m001315 190 KESWSEEEERILVEAHSKVGNR-WAEIAKLIP-GRTENAIKNHWN 232 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.471 | 133 | 188 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-30 | 136 | 231 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-17 | 137 | 186 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-28 | 139 | 191 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.7E-19 | 141 | 199 | No hit | No description |
CDD | cd00167 | 1.25E-16 | 141 | 184 | No hit | No description |
PROSITE profile | PS51294 | 21.564 | 189 | 239 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-17 | 189 | 237 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 192 | 237 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MEGGGGGGGG YSLGNLQNNP SICGPAPPPL TAVDRFLWGR SHSSTQSNVK NKETLVSTNG 60 LYEFSSSSGA IATGVSSWPC FQEINFVDGL FADGDNHSYW AYDTNPNVGY EEEVKVSGKS 120 SKGIGKKAKK GPCPTLIKGQ WTEEEDRKLI RLVKQFGVRK WAQIAEKLAG RAGKQCRERW 180 HNHLRPDIKK ESWSEEEERI LVEAHSKVGN RWAEIAKLIP GRTENAIKNH WNATKRRQNS 240 RRKHKQTENQ IGKPQSSILQ DYIKSKNLKT SSTGTTAITI TPSQSTTTTI NTPSSSTTSE 300 DPSSQFSYFL PDLSEPTVDD SLTCDDELLF LQNFFTDSTI KNPKNPEEKE TNSYNVVDHH 360 HYLKSSIMDP QQFTDASDQC DFFSSNSIPK ICPTDPQEEE KPTSHLYSDL YLSYLLNGAT 420 TSLSNSMDYG YDNNMNLESV MNQTCSNGKK EMDLIEMVSS SHFSQGSNRS NS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-47 | 136 | 238 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-47 | 136 | 238 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29681.m001315 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002525613.1 | 0.0 | transcription factor MYB64 isoform X1 | ||||
TrEMBL | B9SHZ4 | 0.0 | B9SHZ4_RICCO; Myb119, putative | ||||
STRING | XP_002525613.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 7e-67 | myb domain protein 119 |
Link Out ? help Back to Top | |
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Phytozome | 29681.m001315 |
Entrez Gene | 8276379 |