PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29680.m001711
Common NameLOC8258641, RCOM_0609760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 459aa    MW: 50769.3 Da    PI: 5.0766
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29680.m001711genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.48e-34233287155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k r+rWtpeLHe+Fveav++LGGse+AtPk +l+lm+v+gLt++hvkSHLQkYR+
  29680.m001711 233 KHRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRT 287
                    68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.378230290IPR017930Myb domain
SuperFamilySSF466898.24E-18232287IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-31232289IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-25233287IPR006447Myb domain, plants
PfamPF002491.3E-10235286IPR001005SANT/Myb domain
PfamPF143791.7E-22318365IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSSPFPVLPT PLEGQYPKLP DSFQVSSERE LMRNPILQQT SPLCSNSGTV GHLFSSSMRS  60
SIEAQASSLA PQGGQSQNSP FISQSLRDKG SLPVLTTHSS NSEVQSTALI NHSEENKDMS  120
WTIDPLHDLL DFPENVAVQN GQVESTIGVI TSEDFSKRTD WQEWADQLIS VDDDLEPNWS  180
ELLNDANNAD RKQKVVKSSS QISVQPTVHQ PQPVHNGEPY SAANPMSAIP AAKHRMRWTP  240
ELHEAFVEAV NKLGGSERAT PKGVLKLMNV EGLTIYHVKS HLQKYRTARY KPESAEGTSE  300
KKLSPIDEMK SLDLKASMGI TEALRLQMEV QKRLHEQLEI QRNLQLRIEE QGRHLQMMFE  360
QQRKMEDDRS KASSSSLDDP SLPQSNIVQS PGNNKLEVSE LDHARTEISS GGGALEGSSQ  420
NGSRKQKAPE NRTGEDLDPE DDESGPASAK RPRADEIAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-31232291160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-31232291160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-31232291160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-31232291160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-31232291160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-31232291160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-31232291160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-31232291160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29680.m001711
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521993.10.0protein PHR1-LIKE 1 isoform X1
SwissprotQ8GUN51e-114PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLB9S7M40.0B9S7M4_RICCO; DNA binding protein, putative
STRINGXP_002521993.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.21e-115G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]