PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29680.m001688
Common NameLOC8258621, RCOM_0609050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 1049aa    MW: 117396 Da    PI: 4.9082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29680.m001688genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-13853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
    29680.m001688  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding32.71.7e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
    29680.m001688  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
CDDcd001674.97E-121053No hitNo description
PfamPF139214.9E-131070No hitNo description
SuperFamilySSF466898.99E-2133106IPR009057Homeodomain-like
CDDcd116591.12E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118316.9E-60407658IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFFDVADED SSVEQPKFPT  240
TIEELEGKRR VDIEAQLRKQ DIAKNKIAQR QDAPSAILQA NKMNDPETVR KRSKLMLPAP  300
QISDHELEEI AKMGYASDLI AGSEELTEGS GATRALLANY AQTPQQGMTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKREIQTPNP MLTPSATPGD  420
AGLTPRIGMT PARDGYSYGM TPKGTPIRDE LRINEDMDMH DSSKLEQQRK ADLRRNLRSG  480
LINLPQPKNE YQIVIQPPPE DNEEPEEKIE EDMSDRIARE KAEEEARQQA LLRKRSKVLQ  540
RELPRPPAAS LELIKNSLLR ADGDKSSFVP PTSIEQADEM IRKELVTLLE HDNAKYPLDD  600
KLNKEKKKGA KRSANGSAAS IPVIEDFEED EMKEADNFIK EEAQYIRVAM GHENESLDEF  660
VEAHKTCLND LMYFPTRNAY GLSSVAGNVE KLAAIQNEFE NVKTRLEAER EKALRLEKKV  720
NVLTQGYQMR AERQLLPPLD SILKQIDTAG TELECFQVLQ KQEQLAASHR INGLWEEVQK  780
QKELEQTLQR RYGNLMAELG RIQHLMDEYR ALAKQEEEIA AKNRALELAE TAAKQAAILE  840
SNTSEPRPSD DHESSMPVDS SNVEISELQT NAAQGHFNAS PKHGIDNHLE KEHAPMDTDV  900
SSSNDVPSAV GGGTDAHLEK EHAPMDTNVS SSNDVPSAAE GGHTAPLQDN SNERSDSHVS  960
GSDANNKVED PAENSINPEN ISDVVAEGSL LTEGNAGDIA ISTEDGAVVE DQNIVTQATN  1020
QDDANAKQGD SGEDERANLT KDEEKIVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027983794Cell division cycle 5-like protein
5xjc_L0.027983794Cell division cycle 5-like protein
5yzg_L0.027983794Cell division cycle 5-like protein
5z56_L0.027983794Cell division cycle 5-like protein
5z57_L0.027983794Cell division cycle 5-like protein
5z58_L0.027983794Cell division cycle 5-like protein
6ff4_L0.027983794Cell division cycle 5-like protein
6ff7_L0.027983794Cell division cycle 5-like protein
6icz_L0.027983794Cell division cycle 5-like protein
6id0_L0.027983794Cell division cycle 5-like protein
6id1_L0.027983794Cell division cycle 5-like protein
6qdv_O0.027983794Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRQRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29680.m001688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521973.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLB9S7K40.0B9S7K4_RICCO; Cell division control protein, putative
STRINGXP_002521973.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]