PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29676.m001675 | ||||||||
Common Name | RCOM_0603550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | B3 | ||||||||
Protein Properties | Length: 145aa MW: 16977.6 Da PI: 7.989 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.6e-14 | 52 | 134 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k ++ d +++ +++p + +eh + + + rsW vk+ ++++ + + +GW F kan LkegD+++F+l++++ 29676.m001675 52 FYKSVVHVDCERRSFVTIPVRISKEHFQFES---SIFTLRFAERSWHVKV--INYRKLTKICAGWAAFTKANYLKEGDVCIFELIENH 134 668889999999**************54433...366666788*******..8888888899*********************99864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.04E-17 | 51 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.194 | 52 | 144 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-11 | 52 | 133 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.45E-11 | 52 | 132 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.9E-18 | 52 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.0E-4 | 52 | 144 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MVLHLVVQWL GVRIGLTENL EVRNFKQLTW EDNAGAYQAL EAANNFISSY PFYKSVVHVD 60 CERRSFVTIP VRISKEHFQF ESSIFTLRFA ERSWHVKVIN YRKLTKICAG WAAFTKANYL 120 KEGDVCIFEL IENHVLNVFT FECVH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29676.m001675 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079137.1 | 5e-32 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | B9S8P7 | 1e-103 | B9S8P7_RICCO; Uncharacterized protein | ||||
STRING | XP_002522366.1 | 1e-104 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 29676.m001675 |