PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29676.m001648

Common Name

LOC8267256, RCOM_0602390

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 335aa MW: 35625.4 Da PI: 8.5614

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29676.m001648	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.5e-39	66	124	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ 29676.m001648 66 SENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 124 57899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-32	68	123	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-24	69	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	69	123	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	71	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MIQELLGGAG LIGGETKISI AGTILEGTPS HSPSLSPSSS TTTTSATAAT ATATTTTANS 60 TTSSTSENLR CPRCDSSNTK FCYYNNYNLT QPRHFCKTCR RYWTKGGALR NVPIGGGCRK 120 NKNTVVSASV AKSSNNKMKT MVSEIGRSSF GNVFDHELPS SSPIMWASPH NSHLLTLLRA 180 NHNPNPNSTT LSNSLGVKEE TGCMIGTQMM AETTGATGAL NARTLGMDHL SQVPSLGLCS 240 PFWKNSQNQA QHHQQNGFIV GEAQNSGIQE LYQRLRSSTN TYYTDNSSVV LSNVGSSSTS 300 SSNILESSPV AGGELGYWNP TFSWSDLPTT NGAYP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29676.m001648

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025013724.1	0.0	dof zinc finger protein DOF3.7
TrEMBL	B9S8M1	0.0	B9S8M1_RICCO; Zinc finger protein, putative
STRING	XP_002522340.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-32	Dof family protein

Link Out ? help Back to Top
Phytozome	29676.m001648
Entrez Gene	8267256