PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29668.m000320 | ||||||||
Common Name | LOC8265309, RCOM_0590490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | LSD | ||||||||
Protein Properties | Length: 147aa MW: 15329.8 Da PI: 7.9166 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.6 | 9.8e-14 | 30 | 54 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C++V 29668.m000320 30 CSGCRNLLLYPAGATSVCCAVCNAV 54 ************************9 PP | |||||||
2 | zf-LSD1 | 46.5 | 6e-15 | 69 | 93 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ 29668.m000320 69 CGGCHTLLMYIRGATSVQCSCCHTI 93 ***********************97 PP | |||||||
3 | zf-LSD1 | 41.3 | 2.5e-13 | 107 | 131 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+C++C++V 29668.m000320 107 CGNCRMLLMYQYGARSVKCSVCNFV 131 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 2.4E-4 | 19 | 128 | No hit | No description |
TIGRFAMs | TIGR01053 | 4.5E-13 | 27 | 57 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 6.7E-5 | 30 | 128 | IPR011031 | Multihaem cytochrome |
Pfam | PF06943 | 6.2E-11 | 30 | 54 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-14 | 66 | 95 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 69 | 93 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.3E-12 | 104 | 134 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-12 | 107 | 131 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MPVPLAPYPT PPTPYTQPAS ANGAQSQLVC SGCRNLLLYP AGATSVCCAV CNAVTAVPPP 60 GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTINLAMEAN QVAHVNCGNC RMLLMYQYGA 120 RSVKCSVCNF VTAVGASTST TEQKFNS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 29668.m000320 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002528249.1 | 1e-102 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 2e-79 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | B9SQI0 | 1e-101 | B9SQI0_RICCO; Uncharacterized protein | ||||
STRING | XP_002528249.1 | 1e-102 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 9e-68 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | 29668.m000320 |
Entrez Gene | 8265309 |
Publications ? help Back to Top | |||
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