PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29660.m000750
Common NameRCOM_0576610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 271aa    MW: 30335.8 Da    PI: 7.5769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29660.m000750genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14117162555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + + E++RR+ri++++  L el+P++      K + a+iL +A++YI+sLq
  29660.m000750 117 KAMLEKKRRNRIRDKLKALGELIPNC-----HKQDTASILVHAIDYIRSLQ 162
                    6799*********************9.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.27E-14110165No hitNo description
Gene3DG3DSA:4.10.280.101.0E-13112164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.243112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-15115179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11116162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNPQRQCSCM LSDCSPADPN LCNTVKLETD TDSFDDIFGS LSDIQSISYP QQASPTTDQF  60
STILCIEASS ASTERNSTET PDDDYRRCTL DLPLNLWDLG RGIPRELKEN KHDQNKKAML  120
EKKRRNRIRD KLKALGELIP NCHKQDTASI LVHAIDYIRS LQLQIYVRHS LRGLLFNKVP  180
LNGKSLSYFL VKKMSNMNGG AICQALCMSA VPYTCPVMPT NPTAMEMFNT CQFNGLQQMS  240
PHLLFPPQPF LCSLPVLGPA TSTNVISENK V
Cis-element ? help Back to Top
SourceLink
PlantRegMap29660.m000750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9SJW00.0B9SJW0_RICCO; Uncharacterized protein
STRINGXP_002526279.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-13phytochrome interacting factor 3