PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29656.m000483
Common NameRCOM_0572780
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YC
Protein Properties Length: 706aa    MW: 81962.5 Da    PI: 8.1862
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29656.m000483genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC164.71.2e-513304322101
          NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                    l+sfw++q   ie+ +dfknh+lPlarikki+kadedv+misaeaP+++s+ace+fileltlrsw+h eenkrr l+k+diaaa+ rtdifdflvd
  29656.m000483 330 LQSFWANQyqdIERPSDFKNHSLPLARIKKIMKADEDVRMISAEAPIIFSRACEMFILELTLRSWNHMEENKRRKLQKNDIAAAIRRTDIFDFLVD 425
                    89*****99999************************************************************************************ PP

          NF-YC  95 ivprdel 101
                    ivpr +l
  29656.m000483 426 IVPRGDL 432
                    ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030947.2E-8910313IPR004326Mlo-related protein
SuperFamilySSF471132.18E-28325423IPR009072Histone-fold
PfamPF008083.3E-18351414IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-35352429IPR009072Histone-fold
PfamPF030947.9E-57460630IPR004326Mlo-related protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006952Biological Processdefense response
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MENGMIDEDK SLALTPTWAL ATVVIIMVSL GFFFHASLKR CGKWLDETKR KALLSALEKI  60
KDELMLFGLL SLLMGHWVVI VAKICVKSSA VSSRFFPCAV NDDLKSEQNI LDTSSSYTND  120
FYPRKETYTL IDSHHHCPEG HESFASQESL EQLHRLMFVL GVVHVLYSFF VVALAMIKIY  180
SWKIWEKQAR NMATQSVQGS IGSSEAAFYS RRMTRLTTFI SHRTSHPWSQ NRVLVWLLCF  240
SRQFWSSINY ADYMALRYGF ITTHELPLTY DFHNFILRSM EEEFHDVVGI SWPLWVYAIC  300
CIFLNFHACS HQFAYQHIHQ QQQQQLQQEL QSFWANQYQD IERPSDFKNH SLPLARIKKI  360
MKADEDVRMI SAEAPIIFSR ACEMFILELT LRSWNHMEEN KRRKLQKNDI AAAIRRTDIF  420
DFLVDIVPRG DLKDEVLASV PRGSLPVRGA AEAIPFYCKT LETEVYFWLS FLPAILVLLI  480
GTKLHRIVVK LAVEITDPVP RFGNHPLNLR DELFWFGKPR LLLCIIQLIS FQNAFEMATF  540
LWSLWEIRDS SCFMANQWFV GVRLVFGVVS QFWCSFITFP LYIIITQMDA KFKKTVVSEN  600
VRRSLHGWKR RVKARHNSTS ATMKGLSSTT LWNYRTHKHQ IDKSASSSTQ GSTWGFTDRT  660
TSYQEPSTEQ ANRNEILPML EVPLCSYIRY DSCSENDNDQ ITDIKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-50337429395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in modulation of pathogen defense and leaf cell death. Activity seems to be regulated by Ca(2+)-dependent calmodulin binding and seems not to require heterotrimeric G proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29656.m000483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158491e-126AC215849.1 Populus trichocarpa clone POP023-L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581166.10.0MLO-like protein 4 isoform X2
SwissprotO236934e-82MLO4_ARATH; MLO-like protein 4
TrEMBLB9SUH90.0B9SUH9_RICCO; Ccaat-binding transcription factor, putative
STRINGXP_002529648.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.43e-67nuclear factor Y, subunit C9
Publications ? help Back to Top
  1. Devoto A, et al.
    Molecular phylogeny and evolution of the plant-specific seven-transmembrane MLO family.
    J. Mol. Evol., 2003. 56(1): p. 77-88
    [PMID:12569425]
  2. Chen Z, et al.
    Expression analysis of the AtMLO gene family encoding plant-specific seven-transmembrane domain proteins.
    Plant Mol. Biol., 2006. 60(4): p. 583-97
    [PMID:16525893]
  3. Moriyama EN,Strope PK,Opiyo SO,Chen Z,Jones AM
    Mining the Arabidopsis thaliana genome for highly-divergent seven transmembrane receptors.
    Genome Biol., 2006. 7(10): p. R96
    [PMID:17064408]
  4. Chen Z, et al.
    Two seven-transmembrane domain MILDEW RESISTANCE LOCUS O proteins cofunction in Arabidopsis root thigmomorphogenesis.
    Plant Cell, 2009. 21(7): p. 1972-91
    [PMID:19602625]
  5. Bidzinski P, et al.
    Physiological characterization and genetic modifiers of aberrant root thigmomorphogenesis in mutants of Arabidopsis thaliana MILDEW LOCUS O genes.
    Plant Cell Environ., 2014. 37(12): p. 2738-53
    [PMID:24738718]