PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29654.m000304
Common NameRCOM_0571150
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 1029aa    MW: 116043 Da    PI: 7.9974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29654.m000304genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09406450246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g W++eE ++l   v++ G+ +W  Ia  +g +Rt+ qc  r+q 
    29654.m000304 406 GTWSPEELKKLMFIVQEKGMTNWFDIAVLLGRNRTPFQCLARYQR 450
                      79*****************************************96 PP
2Myb_DNA-binding39.21.6e-12458504148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +  WT e+d +l  av+ +G ++W ++a+t+  gRt+ qc +rw k l
    29654.m000304 458 KSEWTNEDDNQLRIAVETFGENDWQSVASTLV-GRTGPQCSNRWKKTL 504
                      578*****************************.***********9975 PP
3Myb_DNA-binding48.42.2e-15512556247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      grWT eE ++l+ av ++G+++W +Ia+ ++ gRt+  c+++w++ 
    29654.m000304 512 GRWTLEESKRLKVAVMLFGPKNWGKIAQFVP-GRTGVKCREKWFNC 556
                      9******************************.***********996 PP
4Myb_DNA-binding38.72.3e-12564607247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+WT+eEd +l+ a+++ G   W+++a+ +   Rt+ +c+ rw  +
    29654.m000304 564 GKWTEEEDSRLKAAIEECGYC-WAKVAKFLS-PRTDSECQRRWKVL 607
                      79*****************99.*********.9**********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01304401IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-10307323IPR009057Homeodomain-like
PROSITE profilePS500905.552307399IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-10372411IPR009057Homeodomain-like
SuperFamilySSF466897.86E-15381453IPR009057Homeodomain-like
PROSITE profilePS512949.036400452IPR017930Myb domain
SMARTSM007173.5E-7404454IPR001005SANT/Myb domain
PfamPF139217.3E-10408469No hitNo description
Gene3DG3DSA:1.10.10.609.5E-12412458IPR009057Homeodomain-like
SuperFamilySSF466891.29E-18436509IPR009057Homeodomain-like
PROSITE profilePS5129420.854453508IPR017930Myb domain
SMARTSM007175.4E-11457506IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-15459511IPR009057Homeodomain-like
CDDcd001671.21E-9460504No hitNo description
SMARTSM007173.4E-13510559IPR001005SANT/Myb domain
PROSITE profilePS5129412.694510557IPR017930Myb domain
SuperFamilySSF466895.03E-25511604IPR009057Homeodomain-like
PfamPF002492.4E-14511556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-17512561IPR009057Homeodomain-like
CDDcd001673.29E-11513555No hitNo description
PROSITE profilePS5129421.691558612IPR017930Myb domain
SMARTSM007178.5E-12562610IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-16562606IPR009057Homeodomain-like
PfamPF002499.8E-11564606IPR001005SANT/Myb domain
CDDcd001676.02E-11565608No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MYPPMQNDDD DEEEEEEEEE EEELYSCDES DDGFNEDMEA LRRACTVAGT NLDQLNIDNT  60
RSPSPADAYG SDDDVELFRN IKTRFSIPMS DFDEPLSLKP LCALPPDLED DAYNDFETLC  120
AVQRRFAAYD NTEARKASKV FPHTEEGDHA TSLFSDDKEI QQYQLLRDND DTHVLPSLGL  180
LQDSSSFPKS AQVFLDAIKR NRSCQKFLRS KLVQIEARIE ENRKLKERVK LFRDLQVSCK  240
KVTGRALAQG KDPRIQLISA QRTLSSRNSK VNDNKVSAMH NGPVENSHAI NFRTALENFP  300
HMLKHKKWTQ KEKENLRKGI RQQFQEMLLQ ISVDQLSGSE GSSGDAYNLD AVFSSIRDLE  360
ITPERIREFL PKVNWDQLAS LYVPGRTGAE CEAQWLNSED PLINHGTWSP EELKKLMFIV  420
QEKGMTNWFD IAVLLGRNRT PFQCLARYQR SLNARILKSE WTNEDDNQLR IAVETFGEND  480
WQSVASTLVG RTGPQCSNRW KKTLHPNISR TGRWTLEESK RLKVAVMLFG PKNWGKIAQF  540
VPGRTGVKCR EKWFNCLNPS LKVGKWTEEE DSRLKAAIEE CGYCWAKVAK FLSPRTDSEC  600
QRRWKVLFPH EVPLLQAARR TQKAAMISNF VDRESERPAL GPHDFVPVPM IRSAPEPKDT  660
NKLKKPKRKI SNTSRSLRST KPKEGMHISS MEDPGITNGT EVEKLENDTG VSNRGIRPCS  720
SKICHTEPVQ DDLMSNFGST FARVANVKGC DSRKKKKLPK SHPKRNELIR KEIGKRKCQL  780
MSNHQGLEPG VTNADSLQIT SGDNATSGEE ERVMLSGAIA EISKLSCDHL DDKVSKASKC  840
TSERNIETAG EGNVASVPCQ IGRRIRSKFS STKASSTDDE DNVRLSSFVA SVSCQPDGRK  900
RSKPRSKSCS KRSSGVTDED NVTLASLVAS VPCQSDGHKR SKLRSKSCSK RVLDTINEDN  960
ISPNGHTSSE GRSKSCLKRT LDTDDEDNDT LASFLRPKSK KKRAEPLEID NQTSSPSSMK  1020
HASELVSKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-333746046155MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-333746046155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29654.m000304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581105.10.0uncharacterized protein LOC8260090
TrEMBLB9SU870.0B9SU87_RICCO; Transcription factor, putative
STRINGXP_002529556.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1