PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29648.m001978
Common NameLOC8270978, RCOM_0562020
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27559.4 Da    PI: 8.949
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29648.m001978genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.25.2e-29959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien+snrqvt+skRrngi+KKA+E+ vLCdaev++iif+s+gk++ey+s
  29648.m001978  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEYCS 59
                   79***********************************************96 PP
2K-box791.1e-2671166196
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                    y+k sg++l++ak+e+l++e++++kke++n+q e+Rhl Ged++sL++ eLq Le++Le++l  iR+k++e+++++ ++ +   +e+q+    L++
  29648.m001978  71 YHKLSGQRLWDAKHENLSNEIDRVKKENDNMQIELRHLNGEDISSLKYPELQALEDALETGLAGIRNKQMEYYKMMKRKDKSLADENQHLSFILHQ 166
                    7899********************************************************************998877777777777777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.534161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-36296IPR002100Transcription factor, MADS-box
CDDcd002656.44E-42280No hitNo description
PRINTSPR004049.6E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1982161IPR002487Transcription factor, K-box
PROSITE profilePS5129714.49384170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGRIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AEVSLIIFAS SGKMHEYCSP  60
STTLVDMLDK YHKLSGQRLW DAKHENLSNE IDRVKKENDN MQIELRHLNG EDISSLKYPE  120
LQALEDALET GLAGIRNKQM EYYKMMKRKD KSLADENQHL SFILHQLEME TKQTVREMEN  180
PYLVSSQHQL QMETKQNMRE MENPYHQQRV RDYNSQVPFA FRVQPIQPNL QGRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-17175173MEF2 CHIMERA
6byy_B5e-17175173MEF2 CHIMERA
6byy_C5e-17175173MEF2 CHIMERA
6byy_D5e-17175173MEF2 CHIMERA
6bz1_A4e-17191183MEF2 CHIMERA
6bz1_B4e-17191183MEF2 CHIMERA
6bz1_C4e-17191183MEF2 CHIMERA
6bz1_D4e-17191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29648.m001978
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1413423e-82HQ141342.1 Camellia japonica cultivar Hongshibaxueshi MADS domain transcription factor (GLO2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520308.11e-176floral homeotic protein GLOBOSA
SwissprotQ0HA251e-115MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLB9S2T91e-174B9S2T9_RICCO; Mads box protein, putative
STRINGXP_002520308.11e-175(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]